View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4051_low_25 (Length: 296)
Name: NF4051_low_25
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4051_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 2245259 - 2245407
Alignment:
| Q |
19 |
gtatattggtttgttagcaagaatgaagaataatgttcacaacggattttctggttttctggaatgaaaacnnnnnnngtacagtatattatatatatgt |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||| |
|
|
| T |
2245259 |
gtatatcggtttgttagcaagaatgaagaataatgttcacaacggattttctggttttctggaatgaaaacaaaaaa---aaagta---tatatatatgc |
2245352 |
T |
|
| Q |
119 |
caattaaggcagaatctaaaaccatatggtgtttgaggaaattgaatttgaagga |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2245353 |
caattaaggcagaatctaaaaccatatggtgtttgaggaaattgaatttgaagga |
2245407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 2245439 - 2245518
Alignment:
| Q |
205 |
agtaattgtacatgattgttattgttgagctaaattgagtagtactggtcaaatgcgtgtgaatattatttacttgcttc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2245439 |
agtaattgtacatgattgttattgttgagctaaattgagtagtactagtcaaatgcgtgtgaatattatttacttgcttc |
2245518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University