View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4051_low_29 (Length: 256)

Name: NF4051_low_29
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4051_low_29
NF4051_low_29
[»] chr2 (2 HSPs)
chr2 (1-240)||(4167695-4167941)
chr2 (1-231)||(4178631-4178868)
[»] chr4 (1 HSPs)
chr4 (4-199)||(34944532-34944727)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4167941 - 4167695
Alignment:
Q  1 atagattttatgcatgcagtaatgtcaattctggtgtttgcagcaattgcattgtttgatctgaatgtggtgaattgcttttttccagaaccatcaaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4167941 atagattttatgcatgcagtaatgtcaattctggtgtttgcagcaattgcattgtttgatcggaatgtggtgaattgcttttttccagaaccatcaaaag 4167842  T
Q  101 agatacaagaaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttttcgttacatttcctacagagagacatggaattggcttc-- 198  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  4167841 agatacaagaaatcctcacggcgttgcctgtggcaattggcgatttttgcagcatgcttttcgttacatttcctacagagagacatggaattggcttccc 4167742  T
Q  199 -----caacaagttaataattgagaaatcttttatgttcacgttcat 240  Q
         ||||||||||||||||||||||||||||||||||||||||||    
T  4167741 cctttcaacaagttaataattgagaaatcttttatgttcacgttcat 4167695  T

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Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 4178868 - 4178631
Alignment:
Q  1 atagattttatgcatgcagtaatgtcaattctggtgtttgcagcaattgcattgtttgatctgaatgtggtgaattgcttttttccagaaccatcaaaag 100  Q
    |||||||| ||||||||  | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4178868 atagatttcatgcatgcgatgatgtcaattctggtgtttgcagcaattgcattgtttgatcagaatgtggtgaattgcttttttccagaaccatcaaaag 4178769  T
Q  101 agatacaagaaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttttcgttacatttcctacagagagacatggaattgg------ 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||          
T  4178768 agatacaagaaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttttcgttgcatttcctactgagagacatggaattgggttccc 4178669  T
Q  195 -cttccaacaagttaataattgagaaatcttttatgtt 231  Q
     ||| ||||||||||||||||||||  | |||||||||    
T  4178668 cctttcaacaagttaataattgagatcttttttatgtt 4178631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 34944532 - 34944727
Alignment:
Q  4 gattttatgcatgcagtaatgtcaattctggtgtttgcagcaattgcattgtttgatctgaatgtggtgaattgcttttttccagaaccatcaaaagaga 103  Q
    ||||| ||||||||| | ||||||||| |||| ||| |||| |||||| |||||||||  |||||||| || || || ||||||  ||| ||| | ||||    
T  34944532 gatttcatgcatgcaattatgtcaattttggttttttcagctattgcaatgtttgatcataatgtggttaactgtttctttccatcaccttcatatgaga 34944631  T
Q  104 tacaagaaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttttcgttacatttcctacagagagacatggaattggcttcc 199  Q
    | |   ||||||| || || |||||||| | |||||| ||||| || |||||||| || ||| ||||||||||  | |||||||||||||||||||    
T  34944632 tgcgtcaaatccttactgcattgcctgttggaattggtgttttctgtagcatgctgtttgttgcatttcctactcatagacatggaattggcttcc 34944727  T

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