View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4051_low_3 (Length: 723)
Name: NF4051_low_3
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4051_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 4359921 - 4360380
Alignment:
| Q |
1 |
gatggcatgtttttgtctatcaagttgctgaaatggtgcaaattgaatttagggttgtctaatattttggggtgtagtttaatatgtttgttttcaagtt |
100 |
Q |
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| T |
4359921 |
gatggcatgtttttgtctatcaagttgctgaaatggtgcaaattgaatttagggttgtctaatattttggggtgtagtttaatatgtttgttttcaagtt |
4360020 |
T |
|
| Q |
101 |
tatagaagtttagtttgacagacttattcttttatttcatgttgaaacatatcatttcatgtggccatagattattataggttttcattattgatatgta |
200 |
Q |
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| T |
4360021 |
tatagaagtttagtttgacagacttattcttttatttcatgtagaaacatatcatttcatgtggccatagattattataggttttcattattgatatgta |
4360120 |
T |
|
| Q |
201 |
tggcactaattaatagttcattttctatctgtctaattttaatttaatttttagatttgaaattatgattccttactacttagtgtgtgaatcat-cgat |
299 |
Q |
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| T |
4360121 |
tggcactaattaatagttcattttctatctgtctaattttaatttaatttttagatttgaaactatgattccttactacttagtgtgtgaatcatccgat |
4360220 |
T |
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| Q |
300 |
ttttgtnnnnnnnnnnnnttgtgttatcgttgttaccgtaatagttatggttgtaaatcaaagataaagttactcgagcatct--gcgctgaggattcgt |
397 |
Q |
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| T |
4360221 |
ttttgt---aaaaaaaaattgtggtatcgttgttaccgtaatagttatggttgtaaatcaaagataaagttactcgagcatctgcgcgctgagg-tacgt |
4360316 |
T |
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| Q |
398 |
tttcgtaaatatggctactcaatcgaaggttaaattttaaatcttgtgtgctattaagaacatt |
461 |
Q |
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| T |
4360317 |
tttcgtaaatatggctactcaagcgaaggttaaattttaaatcttgtgtgctattaagaacatt |
4360380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 557 - 714
Target Start/End: Original strand, 4360474 - 4360631
Alignment:
| Q |
557 |
tcttaaacaaagttatggaataaactcatgaatgacaattcgataatcataataagtgctcaacaaataatttagtttgactatccctgaaaatgacaac |
656 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4360474 |
tcttaaacaaagttatggaataaactcatgaaggacaattcgataatcataataagtgctcaacaaataatttagtttgactatccctgaaaatgataac |
4360573 |
T |
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| Q |
657 |
aaacaaaatagagttgttagaagacatagcaaacgtgctcaattatttaactgatgat |
714 |
Q |
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| T |
4360574 |
aaacaaaatagagttgttagaagacatagcaaacgtgctcaattatttaactgatgat |
4360631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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