View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4051_low_30 (Length: 256)
Name: NF4051_low_30
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4051_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 107 - 239
Target Start/End: Complemental strand, 30761703 - 30761571
Alignment:
| Q |
107 |
taatcttcaacagctaagcattgtatccttgccttgcttctggtttatccgagaacataaactaaatggggtgagacatagtgtcttagcgagtttctta |
206 |
Q |
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| T |
30761703 |
taatcttcaacagctaagcattgtatccttgccttgcttcgcgtttatccgagaacataaactaaatggggtgagacatagtgtcttagcgagttcctta |
30761604 |
T |
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| Q |
207 |
aactaaaatcccgaaaggtctaactgctaacat |
239 |
Q |
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| T |
30761603 |
aactaaaaccccgaaaggtctaactgctaacat |
30761571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 30761927 - 30761821
Alignment:
| Q |
4 |
aacataggaggaggaagaaagagattagagacaaccttaataagtcttaactgttgtttttctattaagatttcgtaaccctaagagaattgattgaaaa |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30761927 |
aacataggaggaggaagaaagagattagagacaaccttaataagtcttaactgttgtttttctattaagatttcgtaaccctaagagaattgattgaaaa |
30761828 |
T |
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| Q |
104 |
ccttaat |
110 |
Q |
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| T |
30761827 |
ccttaat |
30761821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 30751453 - 30751348
Alignment:
| Q |
4 |
aacataggaggaggaagaaagagattagagacaaccttaataagtcttaactgttgtttttctattaagatttcgtaaccctaagagaattgattgaaaa |
103 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||| || |||||||| ||||||||||| |||| ||||||||||||||||||| | |
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| T |
30751453 |
aacataggaggaggaagtaagagactagagacaaccttaataagtcctactaattgtttttttattaagattttgtaa-cctaagagaattgattgaata |
30751355 |
T |
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| Q |
104 |
ccttaat |
110 |
Q |
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| T |
30751354 |
ccttaat |
30751348 |
T |
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