View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4051_low_35 (Length: 241)

Name: NF4051_low_35
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4051_low_35
NF4051_low_35
[»] chr7 (8 HSPs)
chr7 (20-194)||(11566441-11566610)
chr7 (117-230)||(11507500-11507608)
chr7 (117-166)||(11517295-11517344)
chr7 (31-77)||(11517207-11517253)
chr7 (71-117)||(16423067-16423113)
chr7 (31-72)||(11507412-11507453)
chr7 (74-115)||(11517273-11517314)
chr7 (166-198)||(19331818-19331850)
[»] scaffold0003 (1 HSPs)
scaffold0003 (71-117)||(11779-11825)


Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 11566441 - 11566610
Alignment:
Q  20 taggctaggtatctgtaaatgttcttgagtgttgtgctcgtaacattctactagaaaatgtaaaaaatataaattattgggttctaatacaattactatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11566441 taggctaggtatctgtaaatgttcttgagtgttgtgctcgtaacattctactagaaaatgtaaaaaatacaaattattgggttctaatacaattactatt 11566540  T
Q  120 tatattttttacattttctattttcacgaaccatatagctttggtttggttttgtactctaggatgattgtaatg 194  Q
    | |||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||    
T  11566541 tgtattttttacattttctattttcacgaaccatatagc-----tttggttttgtactctaggatgattgtaatg 11566610  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 230
Target Start/End: Original strand, 11507500 - 11507608
Alignment:
Q  117 atttatattttttacattttctattttcacgaaccatatagctttggtttggttttgtactctaggatgattgtaatgaaattaaacaaggaatttgaaa 216  Q
    |||| ||||||||||||||||| |||||||||||||||||||     | ||||||||||||||| |||||| | ||| |||||||||| ||||||| |||    
T  11507500 atttgtattttttacattttctgttttcacgaaccatatagc-----tatggttttgtactctaagatgatcgcaataaaattaaacatggaatttaaaa 11507594  T
Q  217 ttaatgtttcgatt 230  Q
    ||||||||| ||||    
T  11507595 ttaatgtttagatt 11507608  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 11517295 - 11517344
Alignment:
Q  117 atttatattttttacattttctattttcacgaaccatatagctttggttt 166  Q
    |||| ||||||||||||||| | |||||||||||||||||||| ||||||    
T  11517295 atttgtattttttacattttttgttttcacgaaccatatagctatggttt 11517344  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 11517207 - 11517253
Alignment:
Q  31 tctgtaaatgttcttgagtgttgtgctcgtaacattctactagaaaa 77  Q
    ||||| |||||  ||||||||||||||||||||||||||||| ||||    
T  11517207 tctgtgaatgtatttgagtgttgtgctcgtaacattctactaaaaaa 11517253  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 16423067 - 16423113
Alignment:
Q  71 tagaaaatgtaaaaaatataaattattgggttctaatacaattacta 117  Q
    |||||| ||||||| ||| |||||||||||||| |||||||||||||    
T  16423067 tagaaagtgtaaaagatacaaattattgggttccaatacaattacta 16423113  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 11507412 - 11507453
Alignment:
Q  31 tctgtaaatgttcttgagtgttgtgctcgtaacattctacta 72  Q
    |||||| ||||  |||||||||||||||||||||||||||||    
T  11507412 tctgtatatgtatttgagtgttgtgctcgtaacattctacta 11507453  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 11517314 - 11517273
Alignment:
Q  74 aaaatgtaaaaaatataaattattgggttctaatacaattac 115  Q
    ||||||||||||||| |||||||||||||| |||| ||||||    
T  11517314 aaaatgtaaaaaatacaaattattgggttccaataaaattac 11517273  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 19331850 - 19331818
Alignment:
Q  166 tggttttgtactctaggatgattgtaatgaaat 198  Q
    ||||||||||||||||||||||| |||||||||    
T  19331850 tggttttgtactctaggatgattttaatgaaat 19331818  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 11779 - 11825
Alignment:
Q  71 tagaaaatgtaaaaaatataaattattgggttctaatacaattacta 117  Q
    |||||| ||||||| ||| |||||||||||||| |||||||||||||    
T  11779 tagaaagtgtaaaagatacaaattattgggttccaatacaattacta 11825  T

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