View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4051_low_5 (Length: 559)
Name: NF4051_low_5
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4051_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 11 - 541
Target Start/End: Complemental strand, 43290382 - 43289852
Alignment:
| Q |
11 |
cagagagcaaagttacatcatcgcatacaccctcctccgactccaacgcttgaataaacacatcaatcgcttcaaccgggcaattattttgaacatacgc |
110 |
Q |
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| T |
43290382 |
cagagagcaaagttacatcatcgcatacaccctcctccgactccaacgcttgaataaacacatcaatcgcttcaaccgggcaattattttgaacatacgc |
43290283 |
T |
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| Q |
111 |
aacaatcatagtattccaaatctcagtatttttattcaaacatcgatcaaaaaccattcgcgcataatccatacaaccaacatcagaaaacataagtatc |
210 |
Q |
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| T |
43290282 |
aacaatcatagtattccaaatctcagtatttttattcaaacatcgatcaaaaaccattcgcgcataatccatacaaccaacatcagaaaacataagtatc |
43290183 |
T |
|
| Q |
211 |
gcagagcttacaacaaacacatcactaacatactgatcaccaaatttcctcataaacccataaaacatcttcacagttctagaatcacccaatttcgaca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43290182 |
gcagagcttacaacaaacacatcactaacatactgatcaccaaatttcctcataaacccataaaacatcttcacagttctagaatcacccaatttcgaca |
43290083 |
T |
|
| Q |
311 |
aagcaggaaaaagattcacaaaagtaaccggactcggcataacagattgattaatcatattagcaaatgcctcaaccgcttgaggataacgattcatctt |
410 |
Q |
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| T |
43290082 |
aagcaggaaaaagattcacaaaagtaaccggactaggcataacagattgattaatcatattagcaaatgcctcaaccgcttgaggataacgattcatctt |
43289983 |
T |
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| Q |
411 |
aacaaacgaaaaaatcaaagtattccaagcaacaacatttctcctacgcataacatcaaacacattgagtgcatactcatgttgacaagaagcatacata |
510 |
Q |
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| T |
43289982 |
aacaaacgacaaaatcaaagtattccaagcaacaacatttctcctacgcataacatcaaacacattgagtgcatactcatgttgacaagaagcatacata |
43289883 |
T |
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| Q |
511 |
ttcaacaaagagttatatacaattctactag |
541 |
Q |
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| T |
43289882 |
ttcaacaaagagttatatacaattctactag |
43289852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 438 - 538
Target Start/End: Complemental strand, 52105469 - 52105371
Alignment:
| Q |
438 |
agcaacaacatttctcctacgcataacatcaaacacattgagtgcatactcatgttgacaagaagcatacatattcaacaaagagttatatacaattcta |
537 |
Q |
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||||||||||| |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |
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| T |
52105469 |
agcaacaacatatctcctacgcataacatcgaacaccttgagtgcaaactcatgttgacaagaagcatacatatttaac--agagttataaacaattcta |
52105372 |
T |
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