View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4051_low_8 (Length: 454)

Name: NF4051_low_8
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4051_low_8
NF4051_low_8
[»] chr7 (10 HSPs)
chr7 (182-365)||(32414573-32414756)
chr7 (19-119)||(32414410-32414510)
chr7 (235-393)||(30597147-30597311)
chr7 (350-386)||(6845249-6845285)
chr7 (349-383)||(6849822-6849856)
chr7 (349-386)||(6890258-6890295)
chr7 (256-308)||(6890159-6890211)
chr7 (242-308)||(6849709-6849775)
chr7 (235-312)||(45493091-45493168)
chr7 (260-308)||(6845153-6845201)
[»] chr4 (11 HSPs)
chr4 (194-316)||(52187747-52187870)
chr4 (329-390)||(36590344-36590405)
chr4 (207-306)||(36910479-36910578)
chr4 (240-306)||(18365178-18365244)
chr4 (240-306)||(36597681-36597747)
chr4 (245-315)||(36655974-36656044)
chr4 (229-306)||(18084001-18084078)
chr4 (235-306)||(36630268-36630339)
chr4 (235-306)||(36664935-36665006)
chr4 (329-386)||(36627073-36627130)
chr4 (229-305)||(36636001-36636077)
[»] chr2 (7 HSPs)
chr2 (228-393)||(43863044-43863215)
chr2 (228-312)||(43866604-43866688)
chr2 (189-315)||(38990017-38990144)
chr2 (231-314)||(43874280-43874363)
chr2 (352-390)||(38990187-38990225)
chr2 (349-390)||(43866520-43866561)
chr2 (342-390)||(43874198-43874246)
[»] chr3 (20 HSPs)
chr3 (228-386)||(777179-777343)
chr3 (235-306)||(7119797-7119868)
chr3 (212-384)||(7034139-7034317)
chr3 (329-377)||(7119981-7120029)
chr3 (217-312)||(8032351-8032446)
chr3 (344-386)||(477086-477128)
chr3 (30-87)||(777417-777474)
chr3 (343-390)||(1187635-1187682)
chr3 (342-381)||(1205396-1205435)
chr3 (342-381)||(1303667-1303706)
chr3 (21-86)||(13490164-13490229)
chr3 (257-316)||(481953-482015)
chr3 (329-380)||(7127213-7127264)
chr3 (352-395)||(7179049-7179092)
chr3 (352-390)||(8399991-8400029)
chr3 (329-363)||(13489899-13489933)
chr3 (241-310)||(7127014-7127083)
chr3 (257-308)||(476993-477047)
chr3 (329-377)||(7103050-7103098)
chr3 (240-308)||(13460643-13460711)
[»] chr5 (7 HSPs)
chr5 (218-428)||(7022962-7023176)
chr5 (232-389)||(28092037-28092200)
chr5 (235-308)||(25216877-25216950)
chr5 (235-308)||(25281032-25281105)
chr5 (235-315)||(25070180-25070260)
chr5 (235-315)||(25128155-25128235)
chr5 (330-387)||(7975746-7975803)
[»] scaffold0438 (2 HSPs)
scaffold0438 (217-312)||(6271-6369)
scaffold0438 (349-387)||(6409-6447)
[»] chr8 (9 HSPs)
chr8 (217-312)||(26291889-26291987)
chr8 (217-312)||(26305146-26305244)
chr8 (217-312)||(26338501-26338599)
chr8 (235-315)||(35336714-35336794)
chr8 (235-312)||(27700906-27700983)
chr8 (331-386)||(27700733-27700788)
chr8 (349-387)||(26292027-26292065)
chr8 (349-387)||(26305284-26305322)
chr8 (349-387)||(26338639-26338677)
[»] chr6 (3 HSPs)
chr6 (240-305)||(33839361-33839426)
chr6 (329-377)||(33839157-33839205)
chr6 (21-87)||(7174641-7174707)
[»] chr1 (3 HSPs)
chr1 (235-308)||(28927456-28927529)
chr1 (217-304)||(42601950-42602037)
chr1 (235-312)||(14287949-14288026)
[»] scaffold0210 (1 HSPs)
scaffold0210 (235-275)||(15280-15320)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 182 - 365
Target Start/End: Original strand, 32414573 - 32414756
Alignment:
Q  182 taataaattttgtcaaaaatatgatttgcataaattgatcctaattcttcctgattgattaggttctttccttggttcctgatttattgaaggtgaagtt 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32414573 taataaattttgtcaaaaatatgatttgcataaattgatcctaattcttcctgattgattaggttctttccttggttcctgatttattgaaggtgaagtt 32414672  T
Q  282 gccttccttgtgtaacttgaagtcactgaaaataagaaattacctaaccatacctgatggaatggtcgactttttgcttcaaaa 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32414673 gccttccttgtgtaacttgaagtcactgaaaataagaaattacctaaccatacctgatggaatggtcgactttttgcttcaaaa 32414756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 32414410 - 32414510
Alignment:
Q  19 cgactggctgcttgagcttgctaatattgaatcactaatagtttcttcaactactcttgaggtactttacaaaatggtttggttcaataaaattttagcg 118  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32414410 cgactggctgcttgagcttgttaatattgaatcactaatagtttcttcaacttctcttgaggtactttacaaaatggtttggttcaataaaattttagcg 32414509  T
Q  119 g 119  Q
    |    
T  32414510 g 32414510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 393
Target Start/End: Complemental strand, 30597311 - 30597147
Alignment:
Q  235 attgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaaataagaa-----attacct-aa 328  Q
    |||||||||||||| || || ||||||||||||||||||||  |||| | |||||||||||||||||||| ||| ||| | | ||     ||  ||| |     
T  30597311 attgattaggttctctcgttagttcctgatttattgaaggttgagttccattccttgtgtaacttgaagttacttaaagtgaaaatgcgcataccctcat 30597212  T
Q  329 ccatacctgatggaatggtcgactttttgcttcaaaactcaccctcagcaaaggttgacatcgta 393  Q
    |||| ||| |||||| | |  ||||||| ||||||||||||||||||||||||||||| ||||||    
T  30597211 ccatgcctaatggaacgttgtactttttacttcaaaactcaccctcagcaaaggttgaaatcgta 30597147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 6845249 - 6845285
Alignment:
Q  350 actttttgcttcaaaactcaccctcagcaaaggttga 386  Q
    |||||||||||||||||||||||||||||||||||||    
T  6845249 actttttgcttcaaaactcaccctcagcaaaggttga 6845285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 383
Target Start/End: Original strand, 6849822 - 6849856
Alignment:
Q  349 gactttttgcttcaaaactcaccctcagcaaaggt 383  Q
    |||||||||||||||||||||||||||||||||||    
T  6849822 gactttttgcttcaaaactcaccctcagcaaaggt 6849856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 386
Target Start/End: Original strand, 6890258 - 6890295
Alignment:
Q  349 gactttttgcttcaaaactcaccctcagcaaaggttga 386  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  6890258 gactttttgcttcaaaactcaccctcaacaaaggttga 6890295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 6890159 - 6890211
Alignment:
Q  256 gttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcact 308  Q
    ||||||||||||||||||||  |||| | ||||||||||| ||||||||||||    
T  6890159 gttcctgatttattgaaggttgagtttcattccttgtgtagcttgaagtcact 6890211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 6849709 - 6849775
Alignment:
Q  242 aggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcact 308  Q
    ||||||| ||||| ||||||||||||||||||||  | || | |||||||||  |||||||||||||    
T  6849709 aggttctctccttagttcctgatttattgaaggttgaattccattccttgtgggacttgaagtcact 6849775  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 45493168 - 45493091
Alignment:
Q  235 attgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaa 312  Q
    |||||||||||||| ||||   | ||||||||||||||| |  |||| ||||| ||| |||| |||||||||||||||    
T  45493168 attgattaggttctctcctcaatacctgatttattgaagatcgagttcccttctttgcgtaatttgaagtcactgaaa 45493091  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 6845153 - 6845201
Alignment:
Q  260 ctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcact 308  Q
    ||||||||||||||||  |||| | |||||||||||| |||||||||||    
T  6845153 ctgatttattgaaggttgagttccattccttgtgtaatttgaagtcact 6845201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 194 - 316
Target Start/End: Original strand, 52187747 - 52187870
Alignment:
Q  194 tcaaaaatatgatttgcat-aaattgatcctaattcttcctgattgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgt 292  Q
    ||||||||| || |||||| ||| ||||| |||| |||| |||||| |||||||||||| || ||||||||||||||||||||  |||| | ||||||||    
T  52187747 tcaaaaataggacttgcattaaactgatcgtaatacttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgt 52187846  T
Q  293 gtaacttgaagtcactgaaaataa 316  Q
    ||| ||||||||||||||||||||    
T  52187847 gtaccttgaagtcactgaaaataa 52187870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 36590405 - 36590344
Alignment:
Q  329 ccatacctgatggaatggtcgactttttgcttcaaaactcaccctcagcaaaggttgacatc 390  Q
    |||||||||||||||| || ||||||||| ||||||||||||| |||||| | |||||||||    
T  36590405 ccatacctgatggaatagtggactttttgattcaaaactcaccgtcagcagaagttgacatc 36590344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 306
Target Start/End: Original strand, 36910479 - 36910578
Alignment:
Q  207 ttgcataaattgatcctaattcttcctgattgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtca 306  Q
    ||||||||| ||||||||| || |||| |||  |||| |||| ||||| ||||||||||||||| |||| || || | ||| || |||||||||||||||    
T  36910479 ttgcataaactgatcctaactcatcctcatttcttagattctgtccttagttcctgatttattggaggttaaattccattctttatgtaacttgaagtca 36910578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 18365178 - 18365244
Alignment:
Q  240 ttaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtca 306  Q
    |||| |||| ||||| ||||||||||||||| |||| |||||  |||| ||||||||||||||||||    
T  18365178 ttagattctctcctttgttcctgatttattggaggttaagttcacttctttgtgtaacttgaagtca 18365244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 36597747 - 36597681
Alignment:
Q  240 ttaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtca 306  Q
    |||| |||| ||||| ||||||||||||||| |||| |||||  |||| ||||||||||||||||||    
T  36597747 ttagattctctcctttgttcctgatttattggaggttaagttcacttctttgtgtaacttgaagtca 36597681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 36656044 - 36655974
Alignment:
Q  245 ttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaaata 315  Q
    |||| ||||| |||||| ||||||||||| | ||| | ||||| ||||||||||||||||||||| |||||    
T  36656044 ttctctccttagttcctaatttattgaagtttaagataccttctttgtgtaacttgaagtcactggaaata 36655974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 18084001 - 18084078
Alignment:
Q  229 ttcctgattgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtca 306  Q
    ||||| |||| |||| |||| ||||| ||||||||||||||| |||| ||| | ||||| || |||||||||||||||    
T  18084001 ttccttattgcttagattctgtccttagttcctgatttattggaggttaagctcccttcgttatgtaacttgaagtca 18084078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 36630268 - 36630339
Alignment:
Q  235 attgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtca 306  Q
    |||| |||| |||| ||||||||||||||||||||| |||| ||| | ||||| || |||||||||| ||||    
T  36630268 attgcttagattctctccttggttcctgatttattggaggttaagctcccttctttttgtaacttgaggtca 36630339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 36665006 - 36664935
Alignment:
Q  235 attgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtca 306  Q
    |||| |||| |||| ||||| ||||||||||||||| |||| ||| | ||||| || |||||||||||||||    
T  36665006 attgcttagattctctccttagttcctgatttattggaggttaagctcccttcgttatgtaacttgaagtca 36664935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 36627130 - 36627073
Alignment:
Q  329 ccatacctgatggaatggtcgactttttgcttcaaaactcaccctcagcaaaggttga 386  Q
    |||||||||||||||| ||| |||| |||||||||||||| || || ||||| |||||    
T  36627130 ccatacctgatggaatagtcaacttcttgcttcaaaactcgccgtctgcaaaagttga 36627073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 36636077 - 36636001
Alignment:
Q  229 ttcctgattgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtc 305  Q
    ||||| |||| |||| |||| || || |||||||||||| |  |||| ||| ||||||| |||||||||||||||||    
T  36636077 ttcctaattgtttagattctctcattagttcctgatttactagaggttaagctgccttctttgtgtaacttgaagtc 36636001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 228 - 393
Target Start/End: Complemental strand, 43863215 - 43863044
Alignment:
Q  228 cttcctgattgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaaat--aagaaat--ta 323  Q
    ||||||||||| ||||||||||||||| |||| || ||||||||||||  || | ||||||||||||||||||||||||||||||||  |||   |  ||    
T  43863215 cttcctgattgcttaggttctttccttagttcgtggtttattgaaggtagagctcccttccttgtgtaacttgaagtcactgaaaattaaagtggtcata 43863116  T
Q  324 cct--aaccatacctgatggaatggtcgactttttgcttcaaaactcaccctcagcaaaggttgacatcgta 393  Q
    |||  | | |||| ||| | |||||| ||||||||| ||||||||||||||||  |||||||||||||||||    
T  43863115 ccttcatcgatacgtgacgaaatggtagactttttgattcaaaactcaccctcgacaaaggttgacatcgta 43863044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 228 - 312
Target Start/End: Complemental strand, 43866688 - 43866604
Alignment:
Q  228 cttcctgattgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaa 312  Q
    ||||||||||| |||||| |||||||| |||| |||||||||||||||  |||| |||||||||| |||||||||||| ||||||    
T  43866688 cttcctgattgcttaggtgctttccttagttcgtgatttattgaaggttgagttcccttccttgtttaacttgaagtcgctgaaa 43866604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 315
Target Start/End: Original strand, 38990017 - 38990144
Alignment:
Q  189 ttttgtcaaaaatatgatttgcat-aaattgatcctaattcttcctgattgattaggttctttccttggttcctgatttattgaaggtgaagttgccttc 287  Q
    |||| |||||||||||| |||||| ||| ||||| |||| ||||||||||| |||||||||||| ||  ||||||||||||||||||   || | | | |    
T  38990017 ttttttcaaaaatatgacttgcattaaactgatcgtaatacttcctgattgcttaggttctttctttatttcctgatttattgaaggctgagctccatcc 38990116  T
Q  288 cttgtgtaacttgaagtcactgaaaata 315  Q
    ||||| |||||||||||| |||||||||    
T  38990117 cttgtataacttgaagtccctgaaaata 38990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 43874363 - 43874280
Alignment:
Q  231 cctgattgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaaat 314  Q
    |||||||| |||||||||| |||| |||| | |||| |||| |||  || | | ||||||||||||||||||||||| ||||||    
T  43874363 cctgattgcttaggttcttaccttagttcgtaatttgttgacggtagagctcctttccttgtgtaacttgaagtcaccgaaaat 43874280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 390
Target Start/End: Original strand, 38990187 - 38990225
Alignment:
Q  352 tttttgcttcaaaactcaccctcagcaaaggttgacatc 390  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  38990187 tttttgattcaaaactcaccctcggcaaaggttgacatc 38990225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 43866561 - 43866520
Alignment:
Q  349 gactttttgcttcaaaactcaccctcagcaaaggttgacatc 390  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  43866561 gactttttgattcaaaactcaccctcgacaaaggttgacatc 43866520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 43874246 - 43874198
Alignment:
Q  342 aatggtcgactttttgcttcaaaactcaccctcagcaaaggttgacatc 390  Q
    |||||| ||||||||| |||||||||||||||   ||||||||||||||    
T  43874246 aatggtggactttttgattcaaaactcacccttgacaaaggttgacatc 43874198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 386
Target Start/End: Complemental strand, 777343 - 777179
Alignment:
Q  228 cttcctgattgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaaataagaaattacct- 326  Q
    |||| |||||| ||||||||||||||||||||||||||||||||| ||  |  |  ||| ||||||||||||||||||| ||||||||| ||  |||||     
T  777343 cttcttgattgcttaggttctttccttggttcctgatttattgaacgttgaactctcttacttgtgtaacttgaagtcattgaaaataaaaacataccta 777244  T
Q  327 -----aaccatacctgatggaatggtcgactttttgcttcaaaactcaccctcagcaaaggttga 386  Q
         | | |||||||| |||||| | ||||| ||| ||||||||||||| || |||||||||||    
T  777243 tcttcatcaatacctgacggaatgatagacttattgattcaaaactcaccatcggcaaaggttga 777179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 7119797 - 7119868
Alignment:
Q  235 attgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtca 306  Q
    |||| ||||||||| ||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||    
T  7119797 attgcttaggttctctccttagttcctgatttattgaaggttaagctaccttccttgtgtaacttgaagtca 7119868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 384
Target Start/End: Original strand, 7034139 - 7034317
Alignment:
Q  212 taaattgatcctaattcttcctgattgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaa 311  Q
    |||| |||||||||| ||||||||| | ||||||||||||||| ||||||||  ||| ||||||  || | |||||||||  ||||||||||| ||||||    
T  7034139 taaactgatcctaatacttcctgatggcttaggttctttccttagttcctgaactatcgaaggttgagcttccttccttgcataacttgaagttactgaa 7034238  T
Q  312 aataagaaattac-----ct-aaccatacctgatggaatggtcgactttttgcttcaaaactcaccctcagcaaaggtt 384  Q
    | || |||  | |     || | | ||||||| | |||| || ||||||||||||||||||||||||||||||||||||    
T  7034239 agtaggaaggttcggacgctcatcaatacctggtcgaatagtagactttttgcttcaaaactcaccctcagcaaaggtt 7034317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 7119981 - 7120029
Alignment:
Q  329 ccatacctgatggaatggtcgactttttgcttcaaaactcaccctcagc 377  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||    
T  7119981 ccatacctgatggaatagtcgactttttgcttcaaaactcaccttcagc 7120029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 312
Target Start/End: Complemental strand, 8032446 - 8032351
Alignment:
Q  217 tgatcctaattcttcctgattgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaa 312  Q
    |||||||||| |||| |||||| ||||||||||||||    |  ||||||||||| |||  |||| ||||||||| ||||||||||||||||||||    
T  8032446 tgatcctaatacttcatgattgcttaggttctttcctgaaattatgatttattgacggttgagttcccttccttgcgtaacttgaagtcactgaaa 8032351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 477086 - 477128
Alignment:
Q  344 tggtcgactttttgcttcaaaactcaccctcagcaaaggttga 386  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  477086 tggtggactttttgcttcaaaactcaccctcagcaaaggttga 477128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 777474 - 777417
Alignment:
Q  30 ttgagcttgctaatattgaatcactaatagtttcttcaactactcttgaggtacttta 87  Q
    |||||||||||||||| |||||||| | ||| ||||||| ||||||||||||||||||    
T  777474 ttgagcttgctaatatcgaatcactgacagtgtcttcaaatactcttgaggtacttta 777417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 1187635 - 1187682
Alignment:
Q  343 atggtcgactttttgcttcaaaactcaccctcagcaaaggttgacatc 390  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  1187635 atggtggactttttgcttcaaaactcaccctcggcaaaggttcacatc 1187682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 381
Target Start/End: Original strand, 1205396 - 1205435
Alignment:
Q  342 aatggtcgactttttgcttcaaaactcaccctcagcaaag 381  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  1205396 aatggtggactttttgcttcaaaactcaccctcagcaaag 1205435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 1303706 - 1303667
Alignment:
Q  342 aatggtcgactttttgcttcaaaactcaccctcagcaaag 381  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  1303706 aatggtggactttttgcttcaaaactcaccctcagcaaag 1303667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 13490229 - 13490164
Alignment:
Q  21 actggctgcttgagcttgctaatattgaatcactaatagtttcttcaactactcttgaggtacttt 86  Q
    |||||||  ||||||||||||||||||||||| | |  || ||||||||||||||| |||||||||    
T  13490229 actggctagttgagcttgctaatattgaatcattgactgtgtcttcaactactcttcaggtacttt 13490164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 316
Target Start/End: Original strand, 481953 - 482015
Alignment:
Q  257 ttcctgatttattgaaggtgaagttgccttccttgt---gtaacttgaagtcactgaaaataa 316  Q
    ||||||||||||||||| | ||| | ||||||||||   ||||||||||||||||||||||||    
T  481953 ttcctgatttattgaagattaagctcccttccttgttgtgtaacttgaagtcactgaaaataa 482015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 7127213 - 7127264
Alignment:
Q  329 ccatacctgatggaatggtcgactttttgcttcaaaactcaccctcagcaaa 380  Q
    |||||||||||||||| ||  |||||||||||||||||||||| || |||||    
T  7127213 ccatacctgatggaatagtttactttttgcttcaaaactcaccttctgcaaa 7127264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 395
Target Start/End: Original strand, 7179049 - 7179092
Alignment:
Q  352 tttttgcttcaaaactcaccctcagcaaaggttgacatcgtata 395  Q
    |||||||||||||||||||| |||||||||||| ||||| ||||    
T  7179049 tttttgcttcaaaactcaccatcagcaaaggttaacatcatata 7179092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 390
Target Start/End: Complemental strand, 8400029 - 8399991
Alignment:
Q  352 tttttgcttcaaaactcaccctcagcaaaggttgacatc 390  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  8400029 tttttgcttcaaaactcaccatcagcaaaggttaacatc 8399991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 13489933 - 13489899
Alignment:
Q  329 ccatacctgatggaatggtcgactttttgcttcaa 363  Q
    ||||||||||||||||||| |||||||||||||||    
T  13489933 ccatacctgatggaatggtggactttttgcttcaa 13489899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 7127014 - 7127083
Alignment:
Q  241 taggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactga 310  Q
    |||||||| ||||| ||||||| ||| |||||||| ||  | | ||||||| ||||||||||||||||||    
T  7127014 taggttctctccttagttcctggtttgttgaaggttaaactccattccttgcgtaacttgaagtcactga 7127083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 476993 - 477047
Alignment:
Q  257 ttcctgatttattgaaggtgaagttgccttcc---ttgtgtaacttgaagtcact 308  Q
    ||||||||||||||||||| ||| | ||||||   ||||||||||||||||||||    
T  476993 ttcctgatttattgaaggttaagctcccttccttgttgtgtaacttgaagtcact 477047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 7103098 - 7103050
Alignment:
Q  329 ccatacctgatggaatggtcgactttttgcttcaaaactcaccctcagc 377  Q
    |||||||||| |||||  | ||||||||||||||||||||||| |||||    
T  7103098 ccatacctgagggaataattgactttttgcttcaaaactcaccttcagc 7103050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 13460643 - 13460711
Alignment:
Q  240 ttaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcact 308  Q
    ||||||||| ||||| |||||| ||||||||| ||| ||| |  |||| ||| ||||||||||||||||    
T  13460643 ttaggttctctccttagttcctaatttattgagggttaagctctcttctttgcgtaacttgaagtcact 13460711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 218 - 428
Target Start/End: Original strand, 7022962 - 7023176
Alignment:
Q  218 gatcctaattcttcctgattgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaa--ata 315  Q
    ||||||||||| || |||||  ||||||||||||||| |||||| | ||||||| ||   || | |||||||||||||||||||||||||||| |  |||    
T  7022962 gatcctaattcgtcttgatttcttaggttctttccttagttcctaacttattgatggctgagctcccttccttgtgtaacttgaagtcactgagagtata 7023061  T
Q  316 aga--aatta--cctaaccatacctgatggaatggtcgactttttgcttcaaaactcaccctcagcaaaggttgacatcgtatagactggttaaggtgag 411  Q
     |   | | |  | || |||||||||||||||| || ||||||||||||| ||| ||||||||||||||||| ||||||  ||||||||||  |||| ||    
T  7023062 tgttgactcatgcttatccatacctgatggaatagttgactttttgcttcgaaagtcaccctcagcaaaggtcgacatc--atagactggtcgaggttag 7023159  T
Q  412 atgcacattcaaatttt 428  Q
    |||  ||||||| ||||    
T  7023160 atgtgcattcaactttt 7023176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 389
Target Start/End: Original strand, 28092037 - 28092200
Alignment:
Q  232 ctgattgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaaataa----gaaattacct- 326  Q
    |||||||  |||||||||| ||| ||| |||||||| |||||||  || |  |||| ||| ||||| |||||||||||||| |||    ||||  ||||     
T  28092037 ctgattgcctaggttcttttcttagtttctgatttactgaaggttgagctctcttctttgagtaacctgaagtcactgaaagtaatgaggaaaaaacctt 28092136  T
Q  327 -aaccatacctgatggaatggtcgactttttgcttcaaaactcaccctcagcaaaggttgacat 389  Q
     | |||||||||||||||| || ||||||||| |||||||||||||||| ||||||||||||||    
T  28092137 catccatacctgatggaatagtggactttttgattcaaaactcaccctcggcaaaggttgacat 28092200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 25216877 - 25216950
Alignment:
Q  235 attgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcact 308  Q
    |||||||||||||| ||| | |||||  |||||||||||||  |||| ||| |||||| |||||||||||||||    
T  25216877 attgattaggttctctccctagttccaaatttattgaaggttgagttccctaccttgtataacttgaagtcact 25216950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 25281032 - 25281105
Alignment:
Q  235 attgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcact 308  Q
    |||||||||||||| ||| | |||||  |||||||||||||  |||| ||| |||||| |||||||||||||||    
T  25281032 attgattaggttctctccctagttccaaatttattgaaggttgagttccctaccttgtataacttgaagtcact 25281105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 25070180 - 25070260
Alignment:
Q  235 attgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaaata 315  Q
    |||||||||||||| || || ||||| ||||| |||| |||  |||| ||| |||||| ||||||||||||||| ||||||    
T  25070180 attgattaggttctctcattagttccggatttgttgacggttgagttccctaccttgtataacttgaagtcacttaaaata 25070260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 25128155 - 25128235
Alignment:
Q  235 attgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaaata 315  Q
    |||||||||||||| || || ||||| ||||| |||| |||  |||| ||| |||||| ||||||||||||||| ||||||    
T  25128155 attgattaggttctctcattagttccggatttgttgacggttgagttccctaccttgtataacttgaagtcacttaaaata 25128235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 7975803 - 7975746
Alignment:
Q  330 catacctgatggaatggtcgactttttgcttcaaaactcaccctcagcaaaggttgac 387  Q
    ||||||||||||||| || ||||| ||||||||||| ||||| || ||||| ||||||    
T  7975803 catacctgatggaatagtggacttcttgcttcaaaattcaccttcggcaaaagttgac 7975746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 312
Target Start/End: Original strand, 6271 - 6369
Alignment:
Q  217 tgatcctaattcttcctgattgattaggttctttccttggttcctga---tttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaa 312  Q
    |||||||||| |||| |||||| ||||||||||||||  | || |||   ||||||||||||  | || ||||||||||||||||||||||||||||||    
T  6271 tgatcctaatacttcatgattgcttaggttctttcctacgctcatgacgatttattgaaggttgacttcccttccttgtgtaacttgaagtcactgaaa 6369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 387
Target Start/End: Original strand, 6409 - 6447
Alignment:
Q  349 gactttttgcttcaaaactcaccctcagcaaaggttgac 387  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  6409 gactttttgcttcaaaactcaccttctgcaaaggttgac 6447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 312
Target Start/End: Original strand, 26291889 - 26291987
Alignment:
Q  217 tgatcctaattcttcctgattgattaggttctttccttggttcctga---tttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaa 312  Q
    |||||||||| |||| |||||| ||||||||||||||  | || |||   ||||||||||||  | || ||||||||||||||||||||||||||||||    
T  26291889 tgatcctaatacttcatgattgcttaggttctttcctacgctcatgaggatttattgaaggttgacttcccttccttgtgtaacttgaagtcactgaaa 26291987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 312
Target Start/End: Original strand, 26305146 - 26305244
Alignment:
Q  217 tgatcctaattcttcctgattgattaggttctttccttggttcctga---tttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaa 312  Q
    |||||||||| |||| |||||| ||||||||||||||  | || |||   ||||||||||||  | || ||||||||||||||||||||||||||||||    
T  26305146 tgatcctaatacttcatgattgcttaggttctttcctacgctcatgaggatttattgaaggttgacttcccttccttgtgtaacttgaagtcactgaaa 26305244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 312
Target Start/End: Original strand, 26338501 - 26338599
Alignment:
Q  217 tgatcctaattcttcctgattgattaggttctttccttggttcctga---tttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaa 312  Q
    |||||||||| |||| |||||| ||||||||||||||  | || |||   ||||||||||||  | || ||||||||||||||||||||||||||||||    
T  26338501 tgatcctaatacttcatgattgcttaggttctttcctacgctcatgaggatttattgaaggttgacttcccttccttgtgtaacttgaagtcactgaaa 26338599  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 35336714 - 35336794
Alignment:
Q  235 attgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaaata 315  Q
    |||| ||||||||| ||||| ||||||||||||||| |||| ||| | ||||| |||||||||||||||||| || |||||    
T  35336714 attgcttaggttctctccttagttcctgatttattggaggttaagctcccttctttgtgtaacttgaagtcattggaaata 35336794  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 27700983 - 27700906
Alignment:
Q  235 attgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaa 312  Q
    |||| ||||||||| ||| | ||||||||||||||||||||  ||||  ||||||| |||||||||||||| ||||||    
T  27700983 attgcttaggttctctccgtagttcctgatttattgaaggttgagttttcttccttatgtaacttgaagtcgctgaaa 27700906  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 27700788 - 27700733
Alignment:
Q  331 atacctgatggaatggtcgactttttgcttcaaaactcaccctcagcaaaggttga 386  Q
    ||||||||||| || || |||||||||||||||||||| || |||||||| |||||    
T  27700788 atacctgatggtatagttgactttttgcttcaaaactcgccttcagcaaaagttga 27700733  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 387
Target Start/End: Original strand, 26292027 - 26292065
Alignment:
Q  349 gactttttgcttcaaaactcaccctcagcaaaggttgac 387  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  26292027 gactttttgcttcaaaactcaccttctgcaaaggttgac 26292065  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 387
Target Start/End: Original strand, 26305284 - 26305322
Alignment:
Q  349 gactttttgcttcaaaactcaccctcagcaaaggttgac 387  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  26305284 gactttttgcttcaaaactcaccttctgcaaaggttgac 26305322  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 387
Target Start/End: Original strand, 26338639 - 26338677
Alignment:
Q  349 gactttttgcttcaaaactcaccctcagcaaaggttgac 387  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  26338639 gactttttgcttcaaaactcaccttctgcaaaggttgac 26338677  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 33839426 - 33839361
Alignment:
Q  240 ttaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtc 305  Q
    |||| |||| ||||| ||||||||||||||| |||| ||| | ||||| |||||||||||||||||    
T  33839426 ttagattctctccttagttcctgatttattggaggttaagcttccttctttgtgtaacttgaagtc 33839361  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 33839205 - 33839157
Alignment:
Q  329 ccatacctgatggaatggtcgactttttgcttcaaaactcaccctcagc 377  Q
    |||||||||||||||| || ||||| ||||||||||||||||| |||||    
T  33839205 ccatacctgatggaatagtggacttcttgcttcaaaactcaccgtcagc 33839157  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 7174707 - 7174641
Alignment:
Q  21 actggctgcttgagcttgctaatattgaatcactaatagtttcttcaactactcttgaggtacttta 87  Q
    ||||| || ||||||||||||||||||||||| | | | ||| ||||  ||||||||||||||||||    
T  7174707 actggttggttgagcttgctaatattgaatcattgacaatttgttcacatactcttgaggtacttta 7174641  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 28927529 - 28927456
Alignment:
Q  235 attgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcact 308  Q
    ||||||||||||||  ||||  ||||||||||||| |||||  |||| | |||||||||||| |||||||||||    
T  28927529 attgattaggttctcaccttaattcctgatttattcaaggttgagttccattccttgtgtaaattgaagtcact 28927456  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 304
Target Start/End: Complemental strand, 42602037 - 42601950
Alignment:
Q  217 tgatcctaattcttcctgattgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagt 304  Q
    ||||||||||||  ||| |||  |||| |||| ||||| ||||||||||||||| |||| ||| |  |||| ||||||||||||||||    
T  42602037 tgatcctaattcaccctcatttcttagattctctccttagttcctgatttattggaggttaagctcacttcgttgtgtaacttgaagt 42601950  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 14288026 - 14287949
Alignment:
Q  235 attgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaa 312  Q
    |||||||||||||| ||||   | ||||||||||||||| |  |||| ||||| ||| |||| |||||||||||||||    
T  14288026 attgattaggttctctcctcaatacctgatttattgaagattgagttcccttctttgcgtaatttgaagtcactgaaa 14287949  T

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Target: scaffold0210 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 15320 - 15280
Alignment:
Q  235 attgattaggttctttccttggttcctgatttattgaaggt 275  Q
    |||||| ||||||| ||||| ||||||||||||||||||||    
T  15320 attgatcaggttctctccttagttcctgatttattgaaggt 15280  T

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