View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4052_low_1 (Length: 848)
Name: NF4052_low_1
Description: NF4052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4052_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 385
Target Start/End: Original strand, 41839897 - 41840272
Alignment:
| Q |
10 |
catcatcaactaattttgttgttttctccttttcattttcaaaatcttttggtccctctcatatatgggaaattttattaatcttcaatgctatgtttca |
109 |
Q |
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| T |
41839897 |
catcatcaactaattttgttgttttctccttttcattttcaaaatcttttggtccctctcatatatgggaaattttattaatcttcaatgctatgtttca |
41839996 |
T |
|
| Q |
110 |
gaatgaccgagttgctgtcctttgagactaacaatcaagtgccagggttgactcaaaatcttaagaaaaattgtaagataaataaatggggactaacata |
209 |
Q |
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| T |
41839997 |
gaatgaccgagttgctgtcctttgagactaacaatcaagtgccagggttgactcaaaatcttaagaaaaattgtaagataaataaatggggactaacata |
41840096 |
T |
|
| Q |
210 |
aacaagtatactctaactctagtaagtaaggatggcaaaacaggttggtcctgtcgaggtggttggtttaacccgttattttttgtggagtgagttggaa |
309 |
Q |
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| T |
41840097 |
aacaagtatactctaactctagtaaggaaggacggcaaaacaggttggtcccgtcgaggtggttggtttaacccgttattttttgtggagtgagttggaa |
41840196 |
T |
|
| Q |
310 |
tttaaaacccgtaactattagttgagccatcccgtaaaacccgttaaatatatggaacgagatcaccaaatctaaa |
385 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| |||||||| |
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| T |
41840197 |
tttagaacccgtaactattagttgagccaccccgtaaaacccgttaaaaatacggaacgagatcacccaatctaaa |
41840272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 700 - 832
Target Start/End: Original strand, 41840651 - 41840783
Alignment:
| Q |
700 |
ctgatgtgtagctcgtcggctctacatgaaacgaggcaggtgagattttcaacccctacctatggttggcctgcccttgcacgattttagacgagttagt |
799 |
Q |
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| T |
41840651 |
ctgatgtgtagctcatcggctctacatgaaacgaggcaggtgagattttcaacccctacctatggttggcctgcccttgcacgattttagacgagttagt |
41840750 |
T |
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| Q |
800 |
gaccaggtgagttatggcatggcgggttggtct |
832 |
Q |
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| | ||||||||||||||||||||||||||||| |
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| T |
41840751 |
ggcgaggtgagttatggcatggcgggttggtct |
41840783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 443 - 581
Target Start/End: Original strand, 41840359 - 41840495
Alignment:
| Q |
443 |
aattttctaattttctctattacatatcacttctatagtagagatcccctnnnnnnnncttctatagtagagnnnnnnnnctcatttaattaaatctctt |
542 |
Q |
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| T |
41840359 |
aattttctaattttctca--tacatatcacttctatagtagagatcccctaaaaaaaacttctatagtagagaaaaaaaactcatttaattaaatctctt |
41840456 |
T |
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| Q |
543 |
tggtgctattttgttggcttattttagacttttattata |
581 |
Q |
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| T |
41840457 |
tggtgctatcttgttggcttattttagacttttattata |
41840495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 406 - 450
Target Start/End: Original strand, 41840289 - 41840333
Alignment:
| Q |
406 |
ccatttctctactactctttatttataagtcagaattaattttct |
450 |
Q |
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| T |
41840289 |
ccatttctctactactctttatttataagtcagaattaattttct |
41840333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 618
Target Start/End: Original strand, 41840532 - 41840570
Alignment:
| Q |
580 |
tagtggactcatcattagttacgtattttgatcacctaa |
618 |
Q |
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| T |
41840532 |
tagtggactcatcattagttacgtattttgatcacctaa |
41840570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 426 - 460
Target Start/End: Original strand, 13262830 - 13262864
Alignment:
| Q |
426 |
atttataagtcagaattaattttctaattttctct |
460 |
Q |
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| T |
13262830 |
atttataagtcacaattaattttctaattttctct |
13262864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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