View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4052_low_2 (Length: 257)
Name: NF4052_low_2
Description: NF4052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4052_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 47211710 - 47211952
Alignment:
| Q |
15 |
caaaggtcattggggttggaggatatctctgggattgggaggtatcccagcattactcctcactttaggggcttacttggtagtggacaccccaaatagt |
114 |
Q |
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| T |
47211710 |
caaaggtcattggggttggaggatatctctgggattgggaggtatcccagcattactcctcactttaggggcttacttggtagtggacaccccaaatagt |
47211809 |
T |
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| Q |
115 |
ctcattgaacgtggtcacttggacaaaggaaaagctgttctgagaaagattcgtggcacggacaacattgaacccgagttcttagagttagtagaagcaa |
214 |
Q |
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| T |
47211810 |
ctcattgaacgtggtcacttggacaaaggaaaagctgttctgagaaagattcgtggcacggacaacattgaacccgagttcttagagttagtagaagcaa |
47211909 |
T |
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| Q |
215 |
gtcgtgttgctaaagaggtgaaacatccattcagaaatctcct |
257 |
Q |
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| T |
47211910 |
gtcgtgttgctaaagaggtgaaacatccattcagaaatctcct |
47211952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 749299 - 749158
Alignment:
| Q |
92 |
tggtagtggacaccccaaatagtctcattgaacgtggtcacttggacaaaggaaaagctgttctgagaaagattcgtggcacggacaacattgaacccga |
191 |
Q |
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|||| ||||||||||| || ||||||||||| ||||||| | | || ||||||||||||| || | ||||||||||||||| ||||||||||||||||| |
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| T |
749299 |
tggttgtggacacccccaacagtctcattgagcgtggtcgccttgaagaaggaaaagctgtacttaaaaagattcgtggcactgacaacattgaacccga |
749200 |
T |
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| Q |
192 |
gttcttagag-ttagtagaagcaagtcgtgttgctaaagaggt |
233 |
Q |
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| T |
749199 |
gttcttggagctttgt-gaggcaagtcgtgttgctaaagaggt |
749158 |
T |
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