View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4052_low_3 (Length: 235)
Name: NF4052_low_3
Description: NF4052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4052_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 47266057 - 47265869
Alignment:
| Q |
31 |
tcattcacaaaattcaaagcgggtatagaaggcttacgatgcaatgtacatggatgaaacacccagcaattgaagcttgaccctacagatagggtaataa |
130 |
Q |
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| T |
47266057 |
tcattcacaaaattcaaagcgggtatagaaggcttacgatgcaatgtacatggatgaaacacccagcaattgaagcttgaccctacagatagggtaataa |
47265958 |
T |
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| Q |
131 |
gataggaacctatctatgtatgaaacagcgcgatgaagtgtatcgttttgaagcttgtattcttcaacaacttctactaaccaatcaat |
219 |
Q |
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| T |
47265957 |
gataggaacctatctatgtatgaaacagcgcgatgaagtgtatcgttttgaagcttgtattcttcaacaacttctactaaccaatcaat |
47265869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 57 - 216
Target Start/End: Complemental strand, 47258662 - 47258503
Alignment:
| Q |
57 |
agaaggcttacgatgcaatgtacatggatgaaacacccagcaattgaagcttgaccctacagatagggtaataagataggaacctatctatgtatgaaac |
156 |
Q |
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| T |
47258662 |
agaaggcttacgatgcaatgtagaaggatgaaacacccaacaattcaaggttgatccttctgatagggtgagaagataggaatatatctatgtatgatac |
47258563 |
T |
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| Q |
157 |
agcgcgatgaagtgtatcgttttgaagcttgtattcttcaacaacttctactaaccaatc |
216 |
Q |
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| T |
47258562 |
agcaagatgaagtgtatcattatgaagcttgtattcttcagcaacttctactaaccaatc |
47258503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 47249720 - 47249767
Alignment:
| Q |
61 |
ggcttacgatgcaatgtacatggatgaaacacccagcaattgaagctt |
108 |
Q |
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| T |
47249720 |
ggcttacgatgcaatgagcatggatgaaacaccgagcaactgaagctt |
47249767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 47242893 - 47242938
Alignment:
| Q |
63 |
cttacgatgcaatgtacatggatgaaacacccagcaattgaagctt |
108 |
Q |
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| T |
47242893 |
cttacgatgcaatgagcatggatgaaacaccaagcaactgaagctt |
47242938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 47254150 - 47254195
Alignment:
| Q |
63 |
cttacgatgcaatgtacatggatgaaacacccagcaattgaagctt |
108 |
Q |
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| T |
47254150 |
cttacgatgcgatgagcatggatgaaacaccaagcaattgaagctt |
47254195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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