View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4052_low_4 (Length: 207)

Name: NF4052_low_4
Description: NF4052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4052_low_4
NF4052_low_4
[»] chr7 (1 HSPs)
chr7 (22-193)||(15634173-15634343)
[»] chr3 (2 HSPs)
chr3 (126-164)||(32972899-32972937)
chr3 (126-165)||(42397903-42397942)
[»] chr1 (4 HSPs)
chr1 (45-106)||(43384405-43384466)
chr1 (126-165)||(29999268-29999307)
chr1 (126-165)||(40949026-40949065)
chr1 (126-161)||(43384340-43384375)
[»] scaffold0038 (1 HSPs)
scaffold0038 (126-165)||(109242-109281)
[»] chr6 (2 HSPs)
chr6 (126-165)||(16276607-16276646)
chr6 (126-165)||(28318136-28318175)
[»] chr2 (2 HSPs)
chr2 (126-165)||(19043217-19043256)
chr2 (126-165)||(39836623-39836662)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 22 - 193
Target Start/End: Complemental strand, 15634343 - 15634173
Alignment:
Q  22 aatcaaattatgtctaaaccacccttatatttgaacatcaattattctcaaacacttattcaacaccttatttaattttctctcttcctctcaatannnn 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||        
T  15634343 aatcaaattatgtctaaaccacccttatatttgaacatcaattattctcaaacactcattcaacaccttatttaattttctctcttcctcccaata-ttt 15634245  T
Q  122 nnnngtactatttattatattcttcttcccaatatttttcatacaaatgcatccatcgccatcatgtctagt 193  Q
        ||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  15634244 ttttgtactatttgttatattcttcttcccaatattttttatacaaatgcatcgatcgccatcatgtctagt 15634173  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 32972937 - 32972899
Alignment:
Q  126 gtactatttattatattcttcttcccaatatttttcata 164  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  32972937 gtactatttgttatattcttcttcccaatatttttcata 32972899  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 42397942 - 42397903
Alignment:
Q  126 gtactatttattatattcttcttcccaatatttttcatac 165  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  42397942 gtactatttgttatattcttcttcccaatgtttttcatac 42397903  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 43384466 - 43384405
Alignment:
Q  45 cttatatttgaacatcaattattctcaaacacttattcaacaccttatttaattttctctct 106  Q
    |||||||||||||| |||||||| ||| | ||| ||||||||| | ||||||||||||||||    
T  43384466 cttatatttgaacaccaattattttcagatactcattcaacacttcatttaattttctctct 43384405  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 29999307 - 29999268
Alignment:
Q  126 gtactatttattatattcttcttcccaatatttttcatac 165  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  29999307 gtactatttgttatattcttcttcccaatgtttttcatac 29999268  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 40949026 - 40949065
Alignment:
Q  126 gtactatttattatattcttcttcccaatatttttcatac 165  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  40949026 gtactatttgttatattcttcttcccaatgtttttcatac 40949065  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 43384375 - 43384340
Alignment:
Q  126 gtactatttattatattcttcttcccaatatttttc 161  Q
    ||||||||||||||||||||||||||||| ||||||    
T  43384375 gtactatttattatattcttcttcccaatgtttttc 43384340  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 109242 - 109281
Alignment:
Q  126 gtactatttattatattcttcttcccaatatttttcatac 165  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  109242 gtactatttgttatattcttcttcccaatgtttttcatac 109281  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 16276646 - 16276607
Alignment:
Q  126 gtactatttattatattcttcttcccaatatttttcatac 165  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  16276646 gtactatttgttatattcttcttcccaatgtttttcatac 16276607  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 28318136 - 28318175
Alignment:
Q  126 gtactatttattatattcttcttcccaatatttttcatac 165  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  28318136 gtactatttgttatattcttcttcccaatgtttttcatac 28318175  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 19043217 - 19043256
Alignment:
Q  126 gtactatttattatattcttcttcccaatatttttcatac 165  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  19043217 gtactatttgttatattcttcttcccaatgtttttcatac 19043256  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 39836662 - 39836623
Alignment:
Q  126 gtactatttattatattcttcttcccaatatttttcatac 165  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  39836662 gtactatttgttatattcttcttcccaatgtttttcatac 39836623  T

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