View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4053_high_11 (Length: 325)
Name: NF4053_high_11
Description: NF4053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4053_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 11875181 - 11875495
Alignment:
| Q |
1 |
attcaaaattcagatatattttgtgtacttctctacaaacacataagaaacatgaaaatgacaaaagacaagataaatttgaactttcttaccaagatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11875181 |
attcaaaattcagatatattttgtgtacttctctagaaacacataagaaacatgaaaatgacaaaagacaagataaatttgaactttcttaccaagatat |
11875280 |
T |
|
| Q |
101 |
ctagtttcccaaattgattcttgataaaatctacaaatgatcttatacttgaatggtatattacatcaagttgatgaaaaacaacaagaccaggcaaaga |
200 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||| || ||||||||||||||||||||||| |
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| T |
11875281 |
ctagtttaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagttgttggaaaacaacaagaccaggcaaaga |
11875380 |
T |
|
| Q |
201 |
aagctgtttcaatttctcaacagcttcaagacctttcatttcatctcttgcagtaagcaccacagtgatccctttagaagccaattgcttgcatactgca |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11875381 |
aagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagtgatccctttagaagccaattgattgcatactgca |
11875480 |
T |
|
| Q |
301 |
aatcctattcctttg |
315 |
Q |
| |
|
||||||||||||||| |
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| T |
11875481 |
aatcctattcctttg |
11875495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 73 - 315
Target Start/End: Original strand, 11878862 - 11879104
Alignment:
| Q |
73 |
ataaatttgaactttcttaccaagatatctagtttcccaaattgattcttgataaaatctacaaatgatcttatacttgaatggtatattacatcaagtt |
172 |
Q |
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||||||||||| | ||||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||||| |
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| T |
11878862 |
ataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagtt |
11878961 |
T |
|
| Q |
173 |
gatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctttcatttcatctcttgcagtaagcaccacagtgatccc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
11878962 |
gatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagtgatccc |
11879061 |
T |
|
| Q |
273 |
tttagaagccaattgcttgcatactgcaaatcctattcctttg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11879062 |
tttagaagccaattgcttgcatactgcaaatcctattcctttg |
11879104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 73 - 315
Target Start/End: Original strand, 11893869 - 11894111
Alignment:
| Q |
73 |
ataaatttgaactttcttaccaagatatctagtttcccaaattgattcttgataaaatctacaaatgatcttatacttgaatggtatattacatcaagtt |
172 |
Q |
| |
|
||||||||||| | ||||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||||| |
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|
| T |
11893869 |
ataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagtt |
11893968 |
T |
|
| Q |
173 |
gatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctttcatttcatctcttgcagtaagcaccacagtgatccc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
11893969 |
gatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagtgatccc |
11894068 |
T |
|
| Q |
273 |
tttagaagccaattgcttgcatactgcaaatcctattcctttg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11894069 |
tttagaagccaattgcttgcatactgcaaatcctattcctttg |
11894111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 73 - 315
Target Start/End: Original strand, 11896278 - 11896520
Alignment:
| Q |
73 |
ataaatttgaactttcttaccaagatatctagtttcccaaattgattcttgataaaatctacaaatgatcttatacttgaatggtatattacatcaagtt |
172 |
Q |
| |
|
||||||||||| | ||||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||||| |
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| T |
11896278 |
ataaatttgaattctcttaccaaaagatctagattaccaaattgattcttgataaaatctacaaatgatcttatacttgcatgatctatgacatcaagtt |
11896377 |
T |
|
| Q |
173 |
gatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctttcatttcatctcttgcagtaagcaccacagtgatccc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
11896378 |
gatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagtgatccc |
11896477 |
T |
|
| Q |
273 |
tttagaagccaattgcttgcatactgcaaatcctattcctttg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11896478 |
tttagaagccaattgcttgcatactgcaaatcctattcctttg |
11896520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 70 - 315
Target Start/End: Original strand, 11868790 - 11869031
Alignment:
| Q |
70 |
aagataaatttgaactttcttaccaagatatctagtttcccaaattgattcttgataaaatctacaaatgatcttatacttgaatggtatattacatcaa |
169 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | | ||| ||||||| |
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|
| T |
11868790 |
aagataaatttgaactt----accaagatatctagttttccaaattgattcttgataaaatctacaaatgatcttatactcgcagcatctatgacatcaa |
11868885 |
T |
|
| Q |
170 |
gttgatgaaaaacaacaagaccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctttcatttcatctcttgcagtaagcaccacagtgat |
269 |
Q |
| |
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||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
11868886 |
gttgatgaaaaacaacaagaccaggcagagaaagatgtttcagcttctcaacagcttcaagacctctcttttcatctcttgcagtaagcaccacagtgat |
11868985 |
T |
|
| Q |
270 |
ccctttagaagccaattgcttgcatactgcaaatcctattcctttg |
315 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
11868986 |
ccctttagaagccaattgattgcatactgcaaatcctattcctttg |
11869031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 90 - 311
Target Start/End: Complemental strand, 25859186 - 25858965
Alignment:
| Q |
90 |
taccaagatatctagtttcccaaattgattcttgataaaatctacaaatgatcttatacttgaatggtatattacatcaagttgatgaaaaacaacaaga |
189 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| |||| |||||| |||| |||| ||||||| | | | ||| |||||||||||||| ||||| ||| | |
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|
| T |
25859186 |
taccaagatatcaagtttaccaaattgatttttgaggaaatctgcaaaagatccaatacttgtaggatctatgacatcaagttgatggaaaaccacatgg |
25859087 |
T |
|
| Q |
190 |
ccaggcaaagaaagctgtttcaatttctcaacagcttcaagacctttcatttcatctcttgcagtaagcaccacagtgatccctttagaagccaattgct |
289 |
Q |
| |
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||||| | | ||| | |||||||| |||||||||||||||||| || | ||||||||||| | |||||||| |||| || |||||| ||||||||| |
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| T |
25859086 |
ccaggaagtgcaagatccttcaatttatcaacagcttcaagacctctcttctcatctcttgctgccagcaccactttgataccattagaaaccaattgct |
25858987 |
T |
|
| Q |
290 |
tgcatactgcaaatcctattcc |
311 |
Q |
| |
|
|||||| ||||||||| ||||| |
|
|
| T |
25858986 |
tgcatattgcaaatccaattcc |
25858965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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