View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4053_high_13 (Length: 291)
Name: NF4053_high_13
Description: NF4053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4053_high_13 |
 | |
|
| [»] scaffold0208 (1 HSPs) |
| |
|
| [»] scaffold0534 (1 HSPs) |
| |
|
| [»] scaffold0455 (1 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0581 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0221 (1 HSPs) |
| | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0208 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 19744 - 19454
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacc |
100 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19744 |
atttccattcaaccctaattctatcctcaatctcttaattgcttccacagagcagagatcaatgttaatctgcttccccgccattggaagctcatagacc |
19645 |
T |
|
| Q |
101 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19644 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
19545 |
T |
|
| Q |
201 |
aagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaatacgttaatgatctcctcctttctttgttt |
291 |
Q |
| |
|
||||||||||||||||| ||||||| || |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19544 |
aagtgtggactctgttctagttgcagatatgaaccattcccccaaagccactttcattcaatacgttaatgatctcctcctttctttgttt |
19454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 5513 - 5223
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5513 |
atttccattcagccctaattctatcctcaatctcttaattgcttccacggagcagagatcaatgttaatctgcttccccgccattggaagctcatagacc |
5414 |
T |
|
| Q |
101 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5413 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
5314 |
T |
|
| Q |
201 |
aagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaatacgttaatgatctcctcctttctttgttt |
291 |
Q |
| |
|
||||||||||||||||||||||||| || |||| || |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5313 |
aagtgtggactctgttccagttgcagatatgaaccaatcccccaaagccactttcattcaataagttaatgatctcctcctttctttgttt |
5223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 7299 - 7589
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7299 |
atttccattcagccctaattctatcctcaatctcttaattgcttccacagagcagagatcaatgttaatatgcttccccgccattggaagctcatagacc |
7398 |
T |
|
| Q |
101 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7399 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
7498 |
T |
|
| Q |
201 |
aagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaatacgttaatgatctcctcctttctttgttt |
291 |
Q |
| |
|
|||||| |||||||||||||||||| || |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7499 |
aagtgtagactctgttccagttgcagatatgaaccattcccccaaagccactttcgttcaatacgttaatgatctcctcctttctttgttt |
7589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 17229690 - 17229980
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17229690 |
atttccattcagccctaattttatcctcaatctcttaattgcttcaacagagcagagatcaatgttaatctgcttccccgccattggaagctcatagacc |
17229789 |
T |
|
| Q |
101 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17229790 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttttttttgtcaaagtttttaactatccaatccacaaaga |
17229889 |
T |
|
| Q |
201 |
aagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaatacgttaatgatctcctcctttctttgttt |
291 |
Q |
| |
|
||||||||||||||||||||||||| || |||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17229890 |
aagtgtggactctgttccagttgcagatatgaaccattcccccaaagccactttcattcaatacattaatgatctcctcctttctttgttt |
17229980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 17051851 - 17051561
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacc |
100 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17051851 |
atttccattcacccctaattctatcctcaatctcttaattgcttccacggagcagagatcaatgttaatctgcttccccgcaattggaagctcatagacc |
17051752 |
T |
|
| Q |
101 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17051751 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
17051652 |
T |
|
| Q |
201 |
aagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaatacgttaatgatctcctcctttctttgttt |
291 |
Q |
| |
|
||||||||||||||||||||||||| || |||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17051651 |
aagtgtggactctgttccagttgcagatatgaaccaatcccccaaagccactttcattcaatacgttaatgatctcctcctttctttgttt |
17051561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 28128712 - 28129002
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28128712 |
atttccattcagccctaattctatcctcaatctcttaattgcttccactgagcagagatcaatgttaatttgcttccccgccattggaagctcatagacc |
28128811 |
T |
|
| Q |
101 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28128812 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
28128911 |
T |
|
| Q |
201 |
aagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaatacgttaatgatctcctcctttctttgttt |
291 |
Q |
| |
|
|||||| |||||||||||||||||| || |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28128912 |
aagtgttgactctgttccagttgcagatatgaaccattcccccaaagccactttcgttcaatacgttaatgatctcctcctttctttgttt |
28129002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 18757704 - 18757989
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacc |
100 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||||| |||||| | ||||||||||||| | |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18757704 |
atttccatccagtactaattttgtcctcaatctctttattgctgcttcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacacc |
18757803 |
T |
|
| Q |
101 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
200 |
Q |
| |
|
| ||||||||| |||||||| |||||||||||||||||||||||||| | |||||||| | |||||| |||||||||||||| | |||||||| ||||| |
|
|
| T |
18757804 |
ctatgtacatcatcctctttgaatggaagtacctcggtcttgcttaacgtaatccacatttactctttctcaaagtttttaacaacccaatccataaaga |
18757903 |
T |
|
| Q |
201 |
aagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaatacgttaatgatctcctcctttctt |
286 |
Q |
| |
|
||||||||||| | | || ||||| || || | |||||| |||||||||| |||||||| | | ||| |||||||| |||||| |
|
|
| T |
18757904 |
aagtgtggacttttgttcaattgcagatatgcaacattcctccaaagccactgtcattcaaaagctcaattatctcctcttttctt |
18757989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 48 - 211
Target Start/End: Complemental strand, 18758300 - 18758137
Alignment:
| Q |
48 |
cagagcagagatcaatattaatctgcttccccgccattggaagctcatagacccgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaa |
147 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
18758300 |
cagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccctatgtacatcctcttctttcaatggaagtacctcggtcttgcttaa |
18758201 |
T |
|
| Q |
148 |
tgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaagaaagtgtggact |
211 |
Q |
| |
|
| |||||||| | || ||| |||||||||||||| | ||||||| ||||||||| ||||||| |
|
|
| T |
18758200 |
ggtaatccacatttgctttttctcaaagtttttaacaacccaatccgcaaagaaagcgtggact |
18758137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 22033017 - 22032824
Alignment:
| Q |
68 |
atctgcttccccgccattggaagctcatagacccgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctt |
167 |
Q |
| |
|
||||||| |||||||||||| | | ||| || | ||| |||||||| ||||||||||| || || || ||||||| | | ||||||||| ||||| | |
|
|
| T |
22033017 |
atctgctcccccgccattgggaaatgatacactctatgcacatcttcttctttcaatgggagcacatccatcttgctcagtcttatccacatattctcct |
22032918 |
T |
|
| Q |
168 |
tgtcaaagtttttaactatccaatccacaaagaaagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaa |
261 |
Q |
| |
|
| ||||||| | | || | || ||||||||||| ||||||| | | |||| |||||||| |||| |||||| |||| ||||| |||||||| |
|
|
| T |
22032917 |
tttcaaagtgtctgacaactcattccacaaagaatgtgtggatttttgtccatttgcatatatgaaccattcctccaaacccactctcattcaa |
22032824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 54757883 - 54758173
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54757883 |
atttccattcagccctaattctatcctcaatctcttaattgcttccacagagcagagatcaaggttaatctgcttccccaccattggaagctcatagacc |
54757982 |
T |
|
| Q |
101 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
54757983 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaaccatccaatccacaaaga |
54758082 |
T |
|
| Q |
201 |
aagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaatacgttaatgatctcctcctttctttgttt |
291 |
Q |
| |
|
|||| |||||||||||||||||||| || |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54758083 |
aagtatggactctgttccagttgcagatatgaaccattcccccaaagccactttcattcaatacgttaatgatctcatcctttctttgttt |
54758173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 9553859 - 9553599
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacc |
100 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||| |||| | | ||||||||||||| | ||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
9553859 |
atttccatccagtcctaattttgtcctcaatctctttattgttgcatcagagcagagatcgacgttaatctacttccccgccattggaagctcatacacc |
9553760 |
T |
|
| Q |
101 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
200 |
Q |
| |
|
| ||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||| |||| | |||||||||||||| |
|
|
| T |
9553759 |
ctatgtatatcatcctctttcaatggaagtacctcggtcttgcttaatgtaatccacatgtgctctttctcaaagtttataacaacccaatccacaaaga |
9553660 |
T |
|
| Q |
201 |
aagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaa |
261 |
Q |
| |
|
||||||||||| | |||||||||| || || | |||||| |||||||| | |||||||| |
|
|
| T |
9553659 |
aagtgtggacttttgtccagttgcagatatgcaacattcctccaaagccattgtcattcaa |
9553599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 3854 - 4144
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3854 |
atttccattcagccctaattctatcctcaatctcttaattgcttccacagagcagagatcaaggttaatctgcttccccaccattggaagctcatagacc |
3953 |
T |
|
| Q |
101 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3954 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
4053 |
T |
|
| Q |
201 |
aagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaatacgttaatgatctcctcctttctttgttt |
291 |
Q |
| |
|
|||| ||||||||| ||||||| || || |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4054 |
aagtatggactctgctccagttccagatatgaaccattcccccaaagccactttcattcaatacgttaatgatctcatcctttctttgttt |
4144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 19850005 - 19850294
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
19850005 |
atttccattcagccctaattctatcctca-tctcttaattgcttccacagagcagagatcaatgttaacatgcttccccgccattggaagctcatagacc |
19850103 |
T |
|
| Q |
101 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19850104 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttttatttgtcaaagtttttaactatccaatccacaaaga |
19850203 |
T |
|
| Q |
201 |
aagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaatacgttaatgatctcctcctttctttgttt |
291 |
Q |
| |
|
||||||||||||||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19850204 |
aagtgtggactctgttccagttgcagatatgaaccattcccccaaagccactttcattcaatacgttaatgatctcctcctttctttgttt |
19850294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 10566881 - 10566606
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacc |
100 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10566881 |
atttccattcagccttaattctatcctcaatctctcaattgcttccacagagcagagatcagcgttaatctgcttccccgccattggaagctcatagacc |
10566782 |
T |
|
| Q |
101 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | | |||||||||||| |
|
|
| T |
10566781 |
ctatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgcaatccacatgttctctttgtcaaagtttctaacaacctaatccacaaaga |
10566682 |
T |
|
| Q |
201 |
aagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaatacgttaatgatctc |
276 |
Q |
| |
|
||||||||||||| |||||||| || || || | |||||| |||||||||| ||||||||||||||||| ||||| |
|
|
| T |
10566681 |
aagtgtggactctattccagttccagatatgcaacattcctccaaagccactgtcattcaatacgttaattatctc |
10566606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 10569053 - 10569328
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacc |
100 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10569053 |
atttccattcagccttaattctatcctcaatctctcaattgcttccacagagcagagatcagcgttaatctgcttccccgccattggaagctcatagacc |
10569152 |
T |
|
| Q |
101 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | | |||||||||||| |
|
|
| T |
10569153 |
ctatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgcaatccacatgttctctttgtcaaagtttctaacaacctaatccacaaaga |
10569252 |
T |
|
| Q |
201 |
aagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaatacgttaatgatctc |
276 |
Q |
| |
|
||||||||||||| |||||||| || || || | |||||| |||||||||| ||||||||||||||||| ||||| |
|
|
| T |
10569253 |
aagtgtggactctattccagttccagatatgcaacattcctccaaagccactgtcattcaatacgttaattatctc |
10569328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 42774361 - 42774140
Alignment:
| Q |
4 |
tccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacccga |
103 |
Q |
| |
|
||||||||| || |||| | |||||||| |||| ||||||||| ||||||||||||| | ||||||| |||||| ||||||| |||||||| |||| | |
|
|
| T |
42774361 |
tccattcagtcccaattctttcctcaatttctttattgcttcctcagagcagagatcgacgttaatcttcttcccttccattgggagctcatacacccta |
42774262 |
T |
|
| Q |
104 |
tgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaagaaag |
203 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||| | || |||||||||||||||| ||||||| |||| | ||||||||||||||||| |
|
|
| T |
42774261 |
tgtacattttcctctttcaatggaagcacctcggtcttgcttaatacaatgcacatgttctctttgtgaaagtttctaacaacccaatccacaaagaaag |
42774162 |
T |
|
| Q |
204 |
tgtggactctgttccagttgca |
225 |
Q |
| |
|
|||||| ||| ||||||||||| |
|
|
| T |
42774161 |
tgtggattcttttccagttgca |
42774140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10565842 - 10565797
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttcc |
46 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
10565842 |
atttccattcagccttaattctatccttaatctcttaattgcttcc |
10565797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 1375649 - 1375363
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacc |
100 |
Q |
| |
|
|||| ||| ||| ||||||||| ||||||||||||| |||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1375649 |
attttcatccagtcctaattttgtcctcaatctctttattgctgcatcagagcagagatcaacgttaatctgcttccccgccattggaagctcatacacc |
1375550 |
T |
|
| Q |
101 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
200 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| |||| | |||||||||||||| |
|
|
| T |
1375549 |
ctatgtacatcatcctctttcaatggaagtacctcggtcttgcttaatgtaatccacatgtgctttttgtcaaagtttctaacaacccaatccacaaaga |
1375450 |
T |
|
| Q |
201 |
aagtgtggac-tctgttccagttgcatatttgaatcattcccacaaagccactttcattcaatacgttaatgatctcctcctttctt |
286 |
Q |
| |
|
|||||||||| | || |||||||||| || || | |||||| |||||||| | |||||||| | | ||| |||||||| |||||| |
|
|
| T |
1375449 |
aagtgtggacttttggtccagttgcagatatgcaacattcctccaaagccattgtcattcaaaagctcaattatctcctcttttctt |
1375363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 17623064 - 17622779
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacc |
100 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||||| |||| | | ||||||||||||| || |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17623064 |
attttcattcagtcctaattttgtcctcaatctctttattgttgcatcagagcagagatcgatgttaatctgcttccccgccattggaagctcatacacc |
17622965 |
T |
|
| Q |
101 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
200 |
Q |
| |
|
| ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| |||||| | ||||||| |||| | |||||||||||||| |
|
|
| T |
17622964 |
ctatgtacatcatcatctttcaatggaagtacctcggtcttgcttaatgtaatccacatgtgctctttcttaaagtttctaacaacccaatccacaaaga |
17622865 |
T |
|
| Q |
201 |
aagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaatacgttaatgatctcctcctttctt |
286 |
Q |
| |
|
||||||||||| | |||||||||| || || | |||||| |||||||||| |||||||| | | ||| |||||||| |||||| |
|
|
| T |
17622864 |
aagtgtggacttttgtccagttgcagatatgcaacattcctccaaagccactgtcattcaaaagctcaattatctcctcttttctt |
17622779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 17630247 - 17629962
Alignment:
| Q |
1 |
atttccattcagccctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacc |
100 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||||| |||| | | ||||||||||||| || |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17630247 |
attttcattcagtcctaattttgtcctcaatctctttattgttgcatcagagcagagatcgatgttaatctgcttccccgccattggaagctcatacacc |
17630148 |
T |
|
| Q |
101 |
cgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaaga |
200 |
Q |
| |
|
| ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| |||||| | ||||||| |||| | |||||||||||||| |
|
|
| T |
17630147 |
ctatgtacatcatcatctttcaatggaagtacctcggtcttgcttaatgtaatccacatgtgctctttcttaaagtttctaacaacccaatccacaaaga |
17630048 |
T |
|
| Q |
201 |
aagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaatacgttaatgatctcctcctttctt |
286 |
Q |
| |
|
||||||||||| | |||||||||| || || | |||||| |||||||||| |||||||| | | ||| |||||||| |||||| |
|
|
| T |
17630047 |
aagtgtggacttttgtccagttgcagatatgcaacattcctccaaagccactgtcattcaaaagctcaattatctcctcttttctt |
17629962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 261
Target Start/End: Original strand, 11980495 - 11980725
Alignment:
| Q |
31 |
tctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacccgatgtacatcttcctctttcaatggaagt |
130 |
Q |
| |
|
||||||||||||| | | ||||| || | ||| || ||||||| |||||||||||| || | ||| || | || |||||||| ||||||||||| || |
|
|
| T |
11980495 |
tctcttaattgctgcttctgagcaaagtttaatgttgatctgctcccccgccattgggagatgatacactctgtgcacatcttcttctttcaatgggagc |
11980594 |
T |
|
| Q |
131 |
acctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaagaaagtgtggactctgttccagttgcatattt |
230 |
Q |
| |
|
|| || |||||||| | | ||||||||| ||||| || ||||||| | | || | ||| ||||||||||| ||||||| | | |||| |||||||| | |
|
|
| T |
11980595 |
acatccgtcttgctcagtcttatccacatattctccttttcaaagtgtctgacaacccattccacaaagaatgtgtggatttttgtccatttgcatatat |
11980694 |
T |
|
| Q |
231 |
gaatcattcccacaaagccactttcattcaa |
261 |
Q |
| |
|
||| |||||| |||| ||||| |||||||| |
|
|
| T |
11980695 |
gaaccattcctccaaacccactctcattcaa |
11980725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 23922 - 23675
Alignment:
| Q |
14 |
cctaattttatcctcaatctcttaattgcttccacagagcagagatcaatattaatctgcttccccgccattggaagctcatagacccgatgtacatctt |
113 |
Q |
| |
|
||||||| | ||||||||||||| |||||||| ||||||||| ||||| |||||||||||||| | ||||||||||||||| |||| ||||||||| | |
|
|
| T |
23922 |
cctaattctgtcctcaatctctttattgcttcttcagagcagatatcaacgttaatctgcttccctgtcattggaagctcatacaccctatgtacatcat |
23823 |
T |
|
| Q |
114 |
cctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaagaaagtgtggactct |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||| | |
|
|
| T |
23822 |
cctctttcaatggaagtacctcagtctttcttaatgtaatccacatgttctctttgtcaaagtttctaacaacccaatccacaaagaaagtgtggacttt |
23723 |
T |
|
| Q |
214 |
gttccagttgcatatttgaatcattcccacaaagccactttcattcaa |
261 |
Q |
| |
|
||||||||||||| || | |||||| |||||||||| |||||||| |
|
|
| T |
23722 |
tgtccagttgcatatatgcaacattcctccaaagccactgtcattcaa |
23675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 30407607 - 30407546
Alignment:
| Q |
230 |
tgaatcattcccacaaagccactttcattcaatacgttaatgatctcctcctttctttgttt |
291 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30407607 |
tgaaccattcccccaaagccactttcattcaatacgttaatgatctcatcctttctttgttt |
30407546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 21157911 - 21157718
Alignment:
| Q |
68 |
atctgcttccccgccattggaagctcatagacccgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctt |
167 |
Q |
| |
|
||||||| |||||||||||| || | ||| || | || |||||||| ||||||||||| || || || |||||||| | | ||||||||| ||||| | |
|
|
| T |
21157911 |
atctgctcccccgccattgggagatgatacactctgtgcacatcttcttctttcaatgggagcacatccgtcttgctcagtcttatccacatattctcct |
21157812 |
T |
|
| Q |
168 |
tgtcaaagtttttaactatccaatccacaaagaaagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaa |
261 |
Q |
| |
|
| ||||||| ||| || | ||| ||||||||||| ||||||| | | |||| |||||||| |||| |||||| |||| ||||| |||||||| |
|
|
| T |
21157811 |
tttcaaagtgtttgacaacccattccacaaagaatgtgtggatttttgtccatttgcatatatgaaccattcctccaaacccactctcattcaa |
21157718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 44343168 - 44342975
Alignment:
| Q |
68 |
atctgcttccccgccattggaagctcatagacccgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctt |
167 |
Q |
| |
|
||||||| |||||||||||| | | ||| || | ||| |||||||| ||||||||||| || || || ||||||| | | ||||||||| ||||| | |
|
|
| T |
44343168 |
atctgctcccccgccattgggaaatgatacactctatgcacatcttcttctttcaatgggagcacatccatcttgctcagtcttatccacatattctcct |
44343069 |
T |
|
| Q |
168 |
tgtcaaagtttttaactatccaatccacaaagaaagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaa |
261 |
Q |
| |
|
| ||||||| | | || | || ||||||||||| ||||||| | | |||| |||||||| |||| |||||| |||| ||||| |||||||| |
|
|
| T |
44343068 |
tttcaaagtgtctgacaactcattccacaaagaatgtgtggatttttgtccatttgcatatatgaaccattcctccaaacccactctcattcaa |
44342975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 261
Target Start/End: Original strand, 107559 - 107752
Alignment:
| Q |
68 |
atctgcttccccgccattggaagctcatagacccgatgtacatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctt |
167 |
Q |
| |
|
||||||| |||||||||||| || | ||| || | || |||||||| ||||||||||| || || || |||||||| | | ||||||||| ||||| | |
|
|
| T |
107559 |
atctgctcccccgccattgggagatgatacactctgtgcacatcttcttctttcaatgggagcacatccgtcttgctcagtcttatccacatattctcct |
107658 |
T |
|
| Q |
168 |
tgtcaaagtttttaactatccaatccacaaagaaagtgtggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaa |
261 |
Q |
| |
|
| ||||||| | | || | ||| ||||||||||| ||||||| | | |||| |||||||| |||| |||||| |||| ||||| |||||||| |
|
|
| T |
107659 |
tttcaaagtgtctgacaacccattccacaaagaatgtgtggatttttgtccatttgcatatatgaaccattcctccaaacccactctcattcaa |
107752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 261
Target Start/End: Complemental strand, 14861 - 14707
Alignment:
| Q |
107 |
acatcttcctctttcaatggaagtacctcggtcttgcttaatgctatccacatgttctctttgtcaaagtttttaactatccaatccacaaagaaagtgt |
206 |
Q |
| |
|
|||||||| ||| ||||||| || || || |||||||| | | ||||||||| ||||| || ||||||| ||| || | ||| ||||||||||| |||| |
|
|
| T |
14861 |
acatcttcttctgtcaatgggagcacatccgtcttgctcagtcttatccacatattctccttttcaaagtgtttgacaacccattccacaaagaatgtgt |
14762 |
T |
|
| Q |
207 |
ggactctgttccagttgcatatttgaatcattcccacaaagccactttcattcaa |
261 |
Q |
| |
|
||| | | |||| |||||||| |||| |||||| |||| ||||| |||||||| |
|
|
| T |
14761 |
ggatttttgtccatttgcatatatgaaccattcctccaaacccactctcattcaa |
14707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University