View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4053_high_17 (Length: 240)
Name: NF4053_high_17
Description: NF4053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4053_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 12112411 - 12112188
Alignment:
| Q |
3 |
ctttctcaactaaaattctaatgtaacatcctgatttttatcaccgcgaatgtattttat-aaataaataaaaagtcttacactaaattatcacatttag |
101 |
Q |
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| T |
12112411 |
ctttctcaactaaaattctaatgtaacatcctgatttttatcagcgcgaatgtatttttttaaataaataaaaagtcttacactaaattatcacatttag |
12112312 |
T |
|
| Q |
102 |
tttcaaattagagtagcataatatttctttcgaaagattttctaaaacaaagatttgaatcaaatgtcacatttaataaattgtattcatatattgagtt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||| |
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| T |
12112311 |
tttcaaattagagtagcataatatttctttcgaaagattttctaaaacaaagatctgaatcaaatgtcacattttataaattgtattcatataatgtgtt |
12112212 |
T |
|
| Q |
202 |
tttgaattaaatcatacactttat |
225 |
Q |
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|||||||||| |||||| |||||| |
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| T |
12112211 |
tttgaattaactcatacgctttat |
12112188 |
T |
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