View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4053_high_2 (Length: 471)
Name: NF4053_high_2
Description: NF4053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4053_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Complemental strand, 50523114 - 50522673
Alignment:
| Q |
19 |
agcacaaaatctacaaaatgatcacaacaacacacccatgccttatttaactactagttggtaagttggatgatagtgtcctcaaactgacaaattaggc |
118 |
Q |
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| T |
50523114 |
agcacaaaatctacaaaatgatcacaacaacacacccatgccttatttaactactagttggtaagttggatgatagtgtcctcaaactgacaaattaggc |
50523015 |
T |
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| Q |
119 |
ataaggacaaaataacatgggccaatatgttggcataatgtttttcttttgtatactaattgtgaactctctttgtctgctacaccatttgttttgttct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50523014 |
ataaggacaaaataacatgggccaatatgttggcataatgtttttcttttgtatactaattgtgaactctctttgtctgctacaccatttgttttgttct |
50522915 |
T |
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| Q |
219 |
tttttgatcctaattactttttcatttctcatccttgatttcactgtccatggacccatcttggccggtggcatcnnnnnnnnnnnngaagccgcattca |
318 |
Q |
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| T |
50522914 |
tttttgatcctgattactttttcatttcccatccttgatttcactgtccatggtcccatcttggccggtggcatcttttttatttttgaagccgcattca |
50522815 |
T |
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| Q |
319 |
tgtctgctattcactgttacaccaacaatgaaaagtaacagatagggataattccaactaaggatgaattaaactcaacattaataaaaataagggacaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50522814 |
tgtctgctattcactgttacaccaacaatgaaaagtaacagatagggataattccaactaaggatgaattaaactcaacattaataaaaataagggacaa |
50522715 |
T |
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| Q |
419 |
aactattactcattgagtaatccacatcaatattccattcat |
460 |
Q |
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| T |
50522714 |
aactattactcattgagtaatccacatcaatattccattcat |
50522673 |
T |
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