View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4053_low_1 (Length: 663)
Name: NF4053_low_1
Description: NF4053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4053_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 19 - 642
Target Start/End: Complemental strand, 17355668 - 17355045
Alignment:
| Q |
19 |
cttttgatagtaattgggtgtgtgacattatgtattgtttttcgattataagnnnnnnnnn-cttatcataaattttgtttgcatatcttatttcctctt |
117 |
Q |
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| T |
17355668 |
cttttgatagtaattaggtgtgtgacattctgtattgtttttcgattataagaaaaacaaaacttatcataaattttgtttgcatatcttatttcctctt |
17355569 |
T |
|
| Q |
118 |
tagaaacacttcgattttcatctatgaaaaatttaattgcatggttagtctctctgctatactatagacatagagttgttgacaaacaacttctataaag |
217 |
Q |
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| T |
17355568 |
tagaaacacttcggttt-catctaagaaaaatttaattgcatggttagtctctctgctatactatagacatagagttgttgacaaacaacttctataaag |
17355470 |
T |
|
| Q |
218 |
gttaatgttatccgtgacttatattattttcgaaggtaagcgatgttgtgattcatacttttgggtttcaactttttgatataatgtcttcaaacactat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |
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| T |
17355469 |
gttaatgttatccgtgacttatattattttcgaaggtaaacgatgttgtgattcatacttttgggtttcaattttttaatataatttcttcaaacactat |
17355370 |
T |
|
| Q |
318 |
ttgtttacattctaggcgactttaggcggaaagaaaaatagaacacgcagtctgtaagagaattctcaaccaaggggtattgcggcaatgttggaatcta |
417 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17355369 |
ttgtttacattctaggtgactttaggtggaaagaaaaatagaacacgcagtctataagagaattctcaaccaaggggtagtgcggcaatgttggaatcta |
17355270 |
T |
|
| Q |
418 |
aagaaatgatgtcgctcgaatcttaccagaatcaagctaatttgttcgtaaaggattatttactagcagattcttttattccatatacttctgtttttgg |
517 |
Q |
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| T |
17355269 |
aagaaatgatgtcgctcgaatcttaccagaatcaagctaatttgttcgtaaaggattatttactagcagattcttttattccatatacttctgtttttgg |
17355170 |
T |
|
| Q |
518 |
gggcatttttgcttgcaaactggtattttacactttagtatgttgtcattctattttcttaatgtatgacacttaaaagatattattgctattttattga |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17355169 |
gggcatttttgcttgcaaactggtattttacactttagtatgttgtcattctattttcttaatgtatgacacttaaaatatattattgctattttattga |
17355070 |
T |
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| Q |
618 |
tttgcatattgcattgcttcttttt |
642 |
Q |
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| T |
17355069 |
tttgcatattgcattgcttgttttt |
17355045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 402 - 576
Target Start/End: Complemental strand, 39441403 - 39441229
Alignment:
| Q |
402 |
gcaatgttggaatctaaagaaatgatgtcgctcgaatcttaccagaatcaagctaatttgttcgtaaaggattatttactagcagattcttttattccat |
501 |
Q |
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|||||||||| ||||||||||| ||| || |||| |||||||| || ||||||||||| || ||||| |||||| ||||||| || | || |||| |
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| T |
39441403 |
gcaatgttggcttctaaagaaatcatgaaattcaaatcataccagaaccaggctaatttgtttgtgaaggaatatttattagcagaccctctgataccat |
39441304 |
T |
|
| Q |
502 |
atacttctgtttttgggggcatttttgcttgcaaactggtattttacactttagtatgttgtcattctattttct |
576 |
Q |
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||||||| || |||| ||||||||||||||||| |||||| || ||| || |||||| |||||||||||| |
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| T |
39441303 |
atacttccattattggtggcatttttgcttgcaagatggtatgttgtactgtactatgttactattctattttct |
39441229 |
T |
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