View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4053_low_10 (Length: 330)
Name: NF4053_low_10
Description: NF4053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4053_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 11874873 - 11874676
Alignment:
| Q |
24 |
cccaaaaccaaacacacgctaaaaaagtgaagggcatgtttagattcaattttgagagtcaaaagtgattctgaagacttctaatttattttgatgttag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| |
|
|
| T |
11874873 |
cccaaaaccaaacacacgctaaaaaagtgaagggcatgtttagattcaattttgagagtcaaaagtgattctgaagacttcaaacttattttgatgctag |
11874774 |
T |
|
| Q |
124 |
gaggttctcgattataattgagtttgtttctaagattgaactaattcgaggttctcaattagaattgacttgactttgtttctgaaatattgaagtca |
221 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11874773 |
gaggttctcgattataattgagtttgtctctaagattgaactaattcgaggttctcaattagaattgacttgactttgtttctgaaaaattgaagtca |
11874676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 11868564 - 11868417
Alignment:
| Q |
26 |
caaaaccaaacacacgctaaaaaagtgaagggcatgtttagattcaattttgagag--tcaaaagtgattctgaagacttctaatttattttgat--gtt |
121 |
Q |
| |
|
|||||||||||| | || ||||||||||| |||||||||||| |||||||||||| |||||||||||| |||||||||| |||| |||||||| ||| |
|
|
| T |
11868564 |
caaaaccaaacatatacttaaaaagtgaagtgcatgtttagatccaattttgagagaatcaaaagtgattatgaagacttcaaattgattttgatatgtt |
11868465 |
T |
|
| Q |
122 |
aggaggttctcgattataattgagtttgtttctaagattgaactaatt |
169 |
Q |
| |
|
|||||||||||||| ||||||||||||| | ||||| |||||||||| |
|
|
| T |
11868464 |
aggaggttctcgatcataattgagtttgactataagaatgaactaatt |
11868417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 11874652 - 11874586
Alignment:
| Q |
246 |
aaggttgaaaaatatttactttgttgaacacttaagatgagctatatccatgagtttcaatgataca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11874652 |
aaggttgaaaaatatttactttgttgaacacttaagatgagctatatccatgagtttcattgataca |
11874586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University