View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4053_low_13 (Length: 296)
Name: NF4053_low_13
Description: NF4053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4053_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 36927114 - 36926826
Alignment:
| Q |
1 |
ctcatcgtcaatgaagttcatgacggtcattgtacatactcatcaaccagatagataagtaaagtagatcgatgttagaaattatactgctgaactcaaa |
100 |
Q |
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| T |
36927114 |
ctcatcgtcaatgaatttcaagagggtcattgtacatactcatcaacaacc-agataagtaaagtagat----gttagaaattatactgctgaactcaaa |
36927020 |
T |
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| Q |
101 |
tactgactcaatattcactgaagtaaagaaaatagtatgatgctctatagcaagttttagcacaccataatgaagataaatagtaaaaagactttacttg |
200 |
Q |
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| T |
36927019 |
tactgactcaatattcactgatgtaaagaaaatagtatgatactctatagcaagttttagcacaccataatgaagataaatagtaaaaagactttacttg |
36926920 |
T |
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| Q |
201 |
cctattctaaaatataatctaaaattaccaagttcaccaccactattattgtttaacaaagaaaataactaaatacaagacccttagccatatt |
294 |
Q |
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| T |
36926919 |
cctattctaaaatataatctaaaattaccaagttcaccaccactattattgtttaacaaagaaaataactaaatacaagacccttagccatatt |
36926826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 36927409 - 36927357
Alignment:
| Q |
1 |
ctcatcgtcaatgaagttcatgacggtcattgtacatactcatcaaccagata |
53 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36927409 |
ctcatcgtcaatgaagttcttgacggtcattgtacatactcatcaaccagata |
36927357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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