View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4053_low_15 (Length: 279)
Name: NF4053_low_15
Description: NF4053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4053_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 2 - 264
Target Start/End: Original strand, 52064812 - 52065074
Alignment:
| Q |
2 |
cacataaattatgtctatcattaaagtttatatttcattttatagtaacattgttgtagataaaatagggtacgctctattcctaattataagcaaaaat |
101 |
Q |
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| T |
52064812 |
cacataaattatgtctatcattaaagtttatatttcattttatagtaacattgttgtagataaaatagggtacgctctattcctaattataagcaaaaat |
52064911 |
T |
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| Q |
102 |
gagtcaaagaaagttgatatatcaacgactcatttttacttataactaagacggaagctaaagaaaagttgatatatttagctagatatatgttattgtc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52064912 |
gagtcaaagaaagttgatatatcaacgactcatttttacttataactaagacggaagctaaagaaaagttgatatatttagctagatatatgttattgtc |
52065011 |
T |
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| Q |
202 |
ccagaccttttatcaatatttaaaggaaccaacttgccctctagggaagcatcccaagtcctg |
264 |
Q |
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| T |
52065012 |
ccagaccttttatcaatatttaaaggaaccaacttgccctctagggaagcatcccaagtcctg |
52065074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 33066064 - 33066099
Alignment:
| Q |
89 |
tataagcaaaaatgagtcaaagaaagttgatatatc |
124 |
Q |
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| T |
33066064 |
tataagcaaaaatgagtcaaagaaagttgatgtatc |
33066099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 28767939 - 28767978
Alignment:
| Q |
80 |
attcctaattataagcaaaaatgagtcaaagaaagttgat |
119 |
Q |
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| T |
28767939 |
attcctatttataagcaaaaatgggtcaaagaaagttgat |
28767978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 11840540 - 11840578
Alignment:
| Q |
81 |
ttcctaattataagcaaaaatgagtcaaagaaagttgat |
119 |
Q |
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|||||| ||||||| |||||||||||||||||||||||| |
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| T |
11840540 |
ttcctatttataagaaaaaatgagtcaaagaaagttgat |
11840578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 28346183 - 28346216
Alignment:
| Q |
86 |
aattataagcaaaaatgagtcaaagaaagttgat |
119 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
28346183 |
aattataagcaaaaatgggtcaaagaaagttgat |
28346216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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