View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4053_low_3 (Length: 440)
Name: NF4053_low_3
Description: NF4053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4053_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 13 - 417
Target Start/End: Complemental strand, 40983194 - 40982790
Alignment:
| Q |
13 |
tcatcaactgcaggtacatcattaaggttcaagctcccagttatctctccacatattttttgaatctgtgactgtacatctgagaaatcctttatccttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40983194 |
tcatcaactgcaggtacatcattaaggttcaagctcccagttatctctccacatattttttgaatctgtgactgtacatctgagaaatcctttatccttt |
40983095 |
T |
|
| Q |
113 |
cttccttttgttgccatagctgttcaagtgctggtgctatagctgcaagctgttccttgatagttccagaagtattatcaggctgcgaaagaataaaaga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40983094 |
cttccttttgttgccatagctgttcaagtgctggtgctatagctgcaagctgttccttgatagttccagaagtattatcaggctgcgaaagaataaaaga |
40982995 |
T |
|
| Q |
213 |
aattagttcataattttattatgttaatgcatcataacgctatatatgtagcaactgtgatgtacgtttctgataaaaggaaaaagctaagtagttagtt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40982994 |
aattagttcataattttattatgttaatgcatcataacgctatatatgtagcaactgtgatgtacgtttctgataaaaggaaaaagctaagtagttagtt |
40982895 |
T |
|
| Q |
313 |
acgaacaattccagcaaagcccttttcgccaagagccgatagaagtgttgaaagctcaagcttagcatcagacaatgcttgaagtagttgtgcccttgac |
412 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40982894 |
acgaacaattccagcaaagcccttttcaccaagagcagatagaagtgttgaaagctcaagcttagcatcagacaatgcttgaagtagttgtgcccttgac |
40982795 |
T |
|
| Q |
413 |
tttgc |
417 |
Q |
| |
|
||||| |
|
|
| T |
40982794 |
tttgc |
40982790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University