View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4053_low_4 (Length: 427)
Name: NF4053_low_4
Description: NF4053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4053_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 15 - 404
Target Start/End: Complemental strand, 40983179 - 40982790
Alignment:
| Q |
15 |
acatcatcaaggttcaagctcccagttatctctccacatattttttgaatctgtgactgtacatctgagaaatcctttatcctttcttccttttgttgcc |
114 |
Q |
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| T |
40983179 |
acatcattaaggttcaagctcccagttatctctccacatattttttgaatctgtgactgtacatctgagaaatcctttatcctttcttccttttgttgcc |
40983080 |
T |
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| Q |
115 |
atagctgttcaagtgctggtgctatagctgcaagctgttccttgatagttccagaagtattatcaggctgcgaaagaataaaagaaattagttcataatt |
214 |
Q |
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| T |
40983079 |
atagctgttcaagtgctggtgctatagctgcaagctgttccttgatagttccagaagtattatcaggctgcgaaagaataaaagaaattagttcataatt |
40982980 |
T |
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| Q |
215 |
ttattatgttaatgcatcataacgctatatatgtagcaactgtgatgtacgtttctgataaaaggaaaaagctaagtagttagttacgaacaattccagc |
314 |
Q |
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| T |
40982979 |
ttattatgttaatgcatcataacgctatatatgtagcaactgtgatgtacgtttctgataaaaggaaaaagctaagtagttagttacgaacaattccagc |
40982880 |
T |
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| Q |
315 |
aaagcccttttcgccaagagccgatagaagtgttgaaagctcaagcttagcatcagacaatgcttgaagtagttgtgcccttgactttgc |
404 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40982879 |
aaagcccttttcaccaagagcagatagaagtgttgaaagctcaagcttagcatcagacaatgcttgaagtagttgtgcccttgactttgc |
40982790 |
T |
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