View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4053_low_9 (Length: 330)

Name: NF4053_low_9
Description: NF4053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4053_low_9
NF4053_low_9
[»] scaffold0229 (1 HSPs)
scaffold0229 (19-307)||(16631-16928)
[»] chr1 (2 HSPs)
chr1 (19-307)||(1401430-1401727)
chr1 (204-291)||(1376128-1376218)


Alignment Details
Target: scaffold0229 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 16631 - 16928
Alignment:
Q  19 agttataaccaatttgcattcaataattttctagtttttaccatgctttacatgcttaatgttgtgtaatttttgctacataatagtgcaattatagcta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16631 agttataaccaatttgcattcaataattttctagtttttaccatgctttacatgcttaatgttgtgtaatttttgctacataatagtgcaattatagcta 16730  T
Q  119 aagagggtctcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctac---------attgataatat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||    
T  16731 aagagggtctcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctacattgataatattgataatat 16830  T
Q  210 ttggttaattttgtattggctttataggtatgcatttgtttgaaaagcttctatgcaatgtgatatgaatttagttgcagattattaactcatccatc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16831 ttggttaattttgtattggctttataggtatgcatttgtttgaaaagtttctatgcaatgtgatatgaatttagttgcagattattaactcatccatc 16928  T

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Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 1401727 - 1401430
Alignment:
Q  19 agttataaccaatttgcattcaataattttctagtttttaccatgctttacatgcttaatgttgtgtaatttttgctacataatagtgcaattatagcta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1401727 agttataaccaatttgcattcaataattttctagtttttaccatgctttacatgcttaatgttgtgtaatttttgctacataatagtgcaattatagcta 1401628  T
Q  119 aagagggtctcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctacattgataa---------tat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  1401627 aagagggtctcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctacattgataatattgataatat 1401528  T
Q  210 ttggttaattttgtattggctttataggtatgcatttgtttgaaaagcttctatgcaatgtgatatgaatttagttgcagattattaactcatccatc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1401527 ttggttaattttgtattggctttataggtatgcatttgtttgaaaagtttctatgcaatgtgatatgaatttagttgcagattattaactcatccatc 1401430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 291
Target Start/End: Complemental strand, 1376218 - 1376128
Alignment:
Q  204 taatatttggttaattttgtattggctttataggtatgcatttgtttgaaaag--cttctatgcaatgtgata-tgaatttagttgcagat 291  Q
    |||||||||||||| |||| |||| |||| |||| ||||| || |||||||||   |||||||||||||||||  || |||||||||||||    
T  1376218 taatatttggttaaatttgaattgactttgtaggaatgcacttctttgaaaagttattctatgcaatgtgatagggattttagttgcagat 1376128  T

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