View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4054_high_1 (Length: 710)
Name: NF4054_high_1
Description: NF4054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4054_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 20 - 707
Target Start/End: Complemental strand, 7222380 - 7221692
Alignment:
| Q |
20 |
gtaggggacccagttgatgatcaccattgttgggcaccaccggaaaatatgaagacaaagagaacagttaaattaattgatagtaacacacctggtactg |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7222380 |
gtaggggacccagttgatgatcaccattgttgggcaccaccggaaaatatgaagacaaagagaacagttaaattaattgatagtaacacacctggcactg |
7222281 |
T |
|
| Q |
120 |
agattgcagctgaaacttctgctgctatggctgcttcttccattgtttttaggcatgttgatcctaaatatgctcgccgtctcctcaataaagcaaaatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
7222280 |
agattgcagctgaaacttctgctgctatggctgcttcttccattgtttttaggcatgttgatcccaaatattctcgccgtctcctcaataaagcaaaatt |
7222181 |
T |
|
| Q |
220 |
ggtatgaaaaataagtacnnnnnnnnng-----cttatatttaaatctagacaatataccaattacatgtatagaaaaatgcacatttgtagcttgtagn |
314 |
Q |
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|||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7222180 |
ggtatgaaaaataagttctttttttttcttcttcttatatttaaacctagacaatataccaattacatgtatagaaaaatgcacatttgtagcttgtagt |
7222081 |
T |
|
| Q |
315 |
nnnnnnnnnnnnnnnnnnnattgaagtaaccaatagtattggttgggaatatgaaagcttaatttatttctcacaatttcctggcagcttttcgaattgg |
414 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7222080 |
atatatttttttttt----attgaagtaaccaatagtattggttgggaatatgaaagcttaatttatttctcacaatttcctggcagcttttcgaattgg |
7221985 |
T |
|
| Q |
415 |
caaaatctcataaaggaacctatgatggagaatgtcccttctactgctcctattcaggctataatgtatgtaatcactcttataattaacctttcctaat |
514 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7221984 |
caagatctcataaaggaacctatgatggagaatgtcccttctactgctcctattcaggctataatgtatgtaatcactcttataattaacctttcttaat |
7221885 |
T |
|
| Q |
515 |
tcactaagagtgaattaattaaattaatgtgatgcttatatataggatgagctaatgtgggctgcaacatggctatacatggcaacaaggaaatcaatgt |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7221884 |
tcactaagagtgaattaattaaattaatgtgatgcttatatataggatgagttaatgtgggctgcaacatggctatacatggcaacaaggaaatcaatgt |
7221785 |
T |
|
| Q |
615 |
acatgaagtacatacaagaagaagcaattagtgctagtgtagcagaattcagttgggaccttaaatatgctggagttcaagttcatctcactc |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7221784 |
acatgaagtacatacaagaagaagcaattagtgctagtgtagcagaattcagttgggaccttaaatatgctggagttcaagttcttctcactc |
7221692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 48526995 - 48526791
Alignment:
| Q |
20 |
gtaggggacccagttgatgatcaccattgttgggcaccaccggaaaatatgaagacaaagagaacagttaaattaattgatagtaacacacctggtactg |
119 |
Q |
| |
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||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||||||||| ||| | |||||| | |||||||||||||||||||||| || |
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| T |
48526995 |
gtaggggacccagaggaagatcatcattgttgggctccaccagaaaaaatgaagacaaaaagatcggttaaagtcattgatagtaacacacctggtagtg |
48526896 |
T |
|
| Q |
120 |
agattgcagctgaaacttctgctgctatggctgcttcttccattgtttttaggcatgttgatcctaaatatgctcgccgtctcctcaataaagcaaaatt |
219 |
Q |
| |
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||||||| ||||||| |||| ||||||||| ||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||| ||||||||||| |
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| T |
48526895 |
agattgcttctgaaacggctgcagctatggcttcttcttccattgtttttagacatactgatcgtaaatatgctcgtcgtctcctcaacaaagcaaaatt |
48526796 |
T |
|
| Q |
220 |
ggtat |
224 |
Q |
| |
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||||| |
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|
| T |
48526795 |
ggtat |
48526791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 570 - 707
Target Start/End: Complemental strand, 48526427 - 48526290
Alignment:
| Q |
570 |
tgtgggctgcaacatggctatacatggcaacaaggaaatcaatgtacatgaagtacatacaagaagaagcaattagtgctagtgtagcagaattcagttg |
669 |
Q |
| |
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||||||| ||||| ||||||||||||||||||| |||||| |||||||||| || |||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
48526427 |
tgtgggcagcaacttggctatacatggcaacaaagaaatcgttgtacatgaaatatatacaagaagaatcaattagtgctaatgtagcagaattcagttg |
48526328 |
T |
|
| Q |
670 |
ggaccttaaatatgctggagttcaagttcatctcactc |
707 |
Q |
| |
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||| |||||||| |||||||||||||||| |||||||| |
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| T |
48526327 |
ggatcttaaatacgctggagttcaagttcttctcactc |
48526290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 388 - 499
Target Start/End: Complemental strand, 48526655 - 48526544
Alignment:
| Q |
388 |
caatttcctggcagcttttcgaattggcaaaatctcataaaggaacctatgatggagaatgtcccttctactgctcctattcaggctataatgtatgtaa |
487 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||| | |
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| T |
48526655 |
caatttcctggcagcttttcgatttggcaaaatcacataaaggaacatatgatggagaatgccctttctactgctcctattcaggctataacgtatgtta |
48526556 |
T |
|
| Q |
488 |
tcactcttataa |
499 |
Q |
| |
|
| |||||||||| |
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|
| T |
48526555 |
ttactcttataa |
48526544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 50305355 - 50305553
Alignment:
| Q |
20 |
gtaggggacccagttgatgatcaccattgttgggcaccaccggaaaatatgaagacaaagagaacagttaaattaattgatagtaacacacctggtactg |
119 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||| ||| | |
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| T |
50305355 |
gtaggggaccgagttgatgatcaccgttgttgggcaccaccagaaagtatgaagacaaagagaacatataaattaattgacagtaacacacccggtttta |
50305454 |
T |
|
| Q |
120 |
agattgcagctgaaacttctgctgctatggctgcttcttccattgtttttaggcatgttgatcctaaatatgctcgccgtctcctcaataaagcaaaat |
218 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| |||||||||||| | |||||| ||||||||||||| |
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| T |
50305455 |
agattgcagctgaaacttctgctgttatggctacttcttccattgtttttagacatgttgatcgtaaatatgctcgtcatctccttaataaagcaaaat |
50305553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 551 - 708
Target Start/End: Original strand, 50306490 - 50306651
Alignment:
| Q |
551 |
tatatataggatgagctaatgtgggctgcaacatggctatac----atggcaacaaggaaatcaatgtacatgaagtacatacaagaagaagcaattagt |
646 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
50306490 |
tatatataggatgagctaatgtgggcagcaacatggctatacatacatggcaacaggaaaatctatgtacatgaagtatatacaagaagaagcaattagt |
50306589 |
T |
|
| Q |
647 |
gctagtgtagcagaattcagttgggaccttaaatatgctggagttcaagttcatctcactcg |
708 |
Q |
| |
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||||||||| | | ||| || |||||||||||||||| ||||||||||||| ||||||||| |
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| T |
50306590 |
gctagtgtaacggtatttagctgggaccttaaatatgtcggagttcaagttcttctcactcg |
50306651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 362 - 456
Target Start/End: Original strand, 50305677 - 50305771
Alignment:
| Q |
362 |
aatatgaaagcttaatttatttctcacaatttcctggcagcttttcgaattggcaaaatctcataaaggaacctatgatggagaatgtcccttct |
456 |
Q |
| |
|
||||||| |||||||||||||||| |||||| ||| || ||||| |||||||||| || |||||||||||||||||||||||||||||| |||| |
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| T |
50305677 |
aatatgatagcttaatttatttcttccaattttctgacaactttttgaattggcaagatttcataaaggaacctatgatggagaatgtcctttct |
50305771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 453 - 533
Target Start/End: Original strand, 50306368 - 50306448
Alignment:
| Q |
453 |
ttctactgctcctattcaggctataatgtatgtaatcactcttataattaacctttcctaattcactaagagtgaattaat |
533 |
Q |
| |
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|||||||| || | |||||||||||||||||||||||||| ||||||| |||| ||| |||||||||| ||||||| |||| |
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|
| T |
50306368 |
ttctactgttcgtgttcaggctataatgtatgtaatcacttttataatcaaccgttcttaattcactacgagtgaaataat |
50306448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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