View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4054_high_6 (Length: 305)

Name: NF4054_high_6
Description: NF4054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4054_high_6
NF4054_high_6
[»] chr6 (31 HSPs)
chr6 (17-294)||(4556943-4557221)
chr6 (184-293)||(4570958-4571067)
chr6 (190-289)||(4585628-4585727)
chr6 (184-280)||(4606941-4607037)
chr6 (187-281)||(4560495-4560589)
chr6 (198-289)||(4480693-4480784)
chr6 (184-294)||(4579418-4579528)
chr6 (195-294)||(4574305-4574404)
chr6 (193-289)||(4598166-4598262)
chr6 (195-294)||(4563708-4563807)
chr6 (204-289)||(4504438-4504523)
chr6 (201-289)||(3171744-3171832)
chr6 (198-289)||(4516321-4516412)
chr6 (194-289)||(4592227-4592322)
chr6 (17-122)||(4607154-4607257)
chr6 (193-294)||(4613754-4613855)
chr6 (198-282)||(4492955-4493039)
chr6 (198-274)||(4505857-4505933)
chr6 (198-289)||(4617022-4617113)
chr6 (26-141)||(4570769-4570880)
chr6 (201-289)||(4267207-4267295)
chr6 (202-289)||(4392067-4392154)
chr6 (204-289)||(4490396-4490481)
chr6 (217-288)||(4568072-4568143)
chr6 (201-282)||(4299788-4299869)
chr6 (198-287)||(4461123-4461212)
chr6 (198-282)||(4515169-4515253)
chr6 (84-124)||(4585465-4585505)
chr6 (198-257)||(4601789-4601848)
chr6 (201-260)||(4622145-4622204)
chr6 (201-289)||(4625954-4626042)
[»] chr8 (3 HSPs)
chr8 (184-282)||(16686315-16686413)
chr8 (184-294)||(20863879-20863989)
chr8 (198-289)||(1674226-1674317)
[»] chr5 (2 HSPs)
chr5 (198-281)||(28000148-28000231)
chr5 (201-287)||(24103002-24103088)
[»] scaffold0288 (1 HSPs)
scaffold0288 (201-287)||(3762-3848)
[»] chr3 (1 HSPs)
chr3 (198-279)||(1281114-1281195)
[»] scaffold0477 (1 HSPs)
scaffold0477 (201-289)||(4727-4815)
[»] chr7 (1 HSPs)
chr7 (204-257)||(3086426-3086479)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 4556943 - 4557221
Alignment:
Q  17 aaatacatgccatataattatctaattcaatccatttaatattagcatgcaataaccactattttattttaagaattcttgcacaagatatgttcaattc 116  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4556943 aaatacatgccatataactatctaattcaatccatttaatattagca----ataaccactattttattttaagaattcttgcacaagatatgttcaattc 4557038  T
Q  117 catcatcagaaactgattacttattagcatcatcccttaaattcaat----tactaaattgcat-nnnnnnngtcacttaggtttgattttgtttaagca 211  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||    |||||||||||||        ||||||||||||||||||||||||||||    
T  4557039 catcatcataaactgattacttattagcatcatctcttaaattcaatgtaatactaaattgcataaaaaaaagtcacttaggtttgattttgtttaagca 4557138  T
Q  212 aaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatctca 294  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4557139 aaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatctca 4557221  T

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Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 184 - 293
Target Start/End: Original strand, 4570958 - 4571067
Alignment:
Q  184 gtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcg 283  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4570958 gtcacttaggtgtgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttct 4571057  T
Q  284 tcttcatctc 293  Q
    ||||||||||    
T  4571058 tcttcatctc 4571067  T

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Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 190 - 289
Target Start/End: Original strand, 4585628 - 4585727
Alignment:
Q  190 taggtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 289  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  4585628 taggtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttca 4585727  T

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Target: chr6; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 4607037 - 4606941
Alignment:
Q  184 gtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgcct 280  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| ||||| |||||||||    
T  4607037 gtcacttaggtttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtctcttgtccccctccgcct 4606941  T

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Target: chr6; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 187 - 281
Target Start/End: Original strand, 4560495 - 4560589
Alignment:
Q  187 acttaggtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgcctt 281  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||    
T  4560495 acttatgtttgattttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctt 4560589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 198 - 289
Target Start/End: Original strand, 4480693 - 4480784
Alignment:
Q  198 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 289  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| || ||||||    
T  4480693 attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttca 4480784  T

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Target: chr6; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 184 - 294
Target Start/End: Original strand, 4579418 - 4579528
Alignment:
Q  184 gtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcg 283  Q
    |||||||| ||| |||||||||| || || ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| |||||     
T  4579418 gtcacttaagttcgattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttct 4579517  T
Q  284 tcttcatctca 294  Q
    |||||| ||||    
T  4579518 tcttcaactca 4579528  T

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Target: chr6; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 195 - 294
Target Start/End: Original strand, 4574305 - 4574404
Alignment:
Q  195 ttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatctca 294  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||| ||||| ||||| |||||| ||||    
T  4574305 ttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctca 4574404  T

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Target: chr6; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 193 - 289
Target Start/End: Original strand, 4598166 - 4598262
Alignment:
Q  193 gtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 289  Q
    |||||||| |||||||| || ||||||||||||||||| || |||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||    
T  4598166 gtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttca 4598262  T

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Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 195 - 294
Target Start/End: Original strand, 4563708 - 4563807
Alignment:
Q  195 ttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatctca 294  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||  |||||| | ||| |||||| ||||    
T  4563708 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactca 4563807  T

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Target: chr6; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 204 - 289
Target Start/End: Complemental strand, 4504523 - 4504438
Alignment:
Q  204 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 289  Q
    ||||||||| || |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||    
T  4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttca 4504438  T

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Target: chr6; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 3171744 - 3171832
Alignment:
Q  201 ttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 289  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||  ||| || |||||||| |||||| ||||||    
T  3171744 ttgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttca 3171832  T

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Target: chr6; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 198 - 289
Target Start/End: Original strand, 4516321 - 4516412
Alignment:
Q  198 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 289  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||| |||||| ||||||    
T  4516321 attttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttca 4516412  T

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Target: chr6; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 194 - 289
Target Start/End: Original strand, 4592227 - 4592322
Alignment:
Q  194 tttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 289  Q
    ||||||||| ||||||||| |||||||| |||| ||| ||||||||||| ||||||||||| ||||||||||||| |||||| |||||| ||||||    
T  4592227 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttca 4592322  T

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Target: chr6; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 4607257 - 4607154
Alignment:
Q  17 aaatacatgccatata--attatctaattcaatccatttaatattagcatgcaataaccactattttattttaagaattcttgcacaagatatgttcaat 114  Q
    ||||||||||||||||  ||| || |||||||||||||||||||||||| |    ||||||||||||| ||||||||||||||||||||||||||||| |    
T  4607257 aaatacatgccatatataattgtcgaattcaatccatttaatattagcaag----aaccactattttagtttaagaattcttgcacaagatatgttcact 4607162  T
Q  115 tccatcat 122  Q
    || |||||    
T  4607161 tctatcat 4607154  T

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Target: chr6; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 4613855 - 4613754
Alignment:
Q  193 gtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatct 292  Q
    |||||||||||||| ||||  ||||| || |||||||| ||||||||||| ||||||||||| || ||||||||||||||||| |||||| |||||| ||    
T  4613855 gtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttcaact 4613756  T
Q  293 ca 294  Q
    ||    
T  4613755 ca 4613754  T

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Target: chr6; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 4492955 - 4493039
Alignment:
Q  198 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttc 282  Q
    ||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||   ||||||||||| ||||||    
T  4492955 attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttc 4493039  T

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Target: chr6; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 4505857 - 4505933
Alignment:
Q  198 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcct 274  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||||| || |||||||    
T  4505857 attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcct 4505933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 198 - 289
Target Start/End: Original strand, 4617022 - 4617113
Alignment:
Q  198 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 289  Q
    ||||||||||||||| || |||||||| ||||| | |||||||||||||||||||||||| ||||| |||| |||||| |||||| ||||||    
T  4617022 attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttca 4617113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 4570769 - 4570880
Alignment:
Q  26 ccatataattatctaattcaatccatttaatattagcatgcaataaccactattttattttaagaattcttgcacaagatatgttcaattccatcatcag 125  Q
    ||||||||||||| |||||||| ||||||||||||||| |    || |||||||||| |||||||||||||||||||||||||||| || |  ||||||     
T  4570769 ccatataattatccaattcaatacatttaatattagcaag----aagcactattttagtttaagaattcttgcacaagatatgttcgatacagtcatcat 4570864  T
Q  126 aaactgattacttatt 141  Q
     |||| ||||||||||    
T  4570865 gaactcattacttatt 4570880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 4267295 - 4267207
Alignment:
Q  201 ttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 289  Q
    |||||||||||  ||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||| ||| || |||||| ||||||    
T  4267295 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttca 4267207  T

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Target: chr6; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 289
Target Start/End: Complemental strand, 4392154 - 4392067
Alignment:
Q  202 tgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 289  Q
    ||||||||||| ||||||||||||| ||| |||||||||||| ||||| ||||||||||||  ||||||||||  |||||| ||||||    
T  4392154 tgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttca 4392067  T

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Target: chr6; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 289
Target Start/End: Complemental strand, 4490481 - 4490396
Alignment:
Q  204 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 289  Q
    ||||||||  || |||||||||||||| ||||||||||||||||||| ||||||  |||||||||||||| | |||||| ||||||    
T  4490481 tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttca 4490396  T

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Target: chr6; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 4568072 - 4568143
Alignment:
Q  217 tccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttc 288  Q
    |||||||||||||| |||||||||||||||||| || |||||||||| ||||||| ||| |||||| |||||    
T  4568072 tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttc 4568143  T

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Target: chr6; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 4299869 - 4299788
Alignment:
Q  201 ttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttc 282  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||| ||||||||||| ||  | |||| |||||| ||||||    
T  4299869 ttgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaaccacctggattagtgttctcctctgccttc 4299788  T

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Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 4461123 - 4461212
Alignment:
Q  198 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtctt 287  Q
    ||||||||||||||| || |||||||| ||||| ||||||||| ||||||||  ||| |||||||| || ||||||||| ||||| ||||    
T  4461123 attttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttctt 4461212  T

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Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 4515253 - 4515169
Alignment:
Q  198 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttc 282  Q
    ||||||||||||||| |||||||| |||||||| |||||||||| ||||||| | || ||| |||| |||||||| || ||||||    
T  4515253 attttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttc 4515169  T

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Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 4585465 - 4585505
Alignment:
Q  84 tttaagaattcttgcacaagatatgttcaattccatcatca 124  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4585465 tttaagaattcttgcacaagatatgttcaattccatcatca 4585505  T

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Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 257
Target Start/End: Original strand, 4601789 - 4601848
Alignment:
Q  198 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccacc 257  Q
    ||||||||||||||| ||||||||||| ||||| |||| |||| ||||||||||||||||    
T  4601789 attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacc 4601848  T

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Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 4622145 - 4622204
Alignment:
Q  201 ttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccagg 260  Q
    |||||||||||  ||||||||||| ||||| ||||||||  |||||||||||||||||||    
T  4622145 ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagg 4622204  T

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Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 4625954 - 4626042
Alignment:
Q  201 ttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 289  Q
    |||||||||||| || || ||||||| ||| ||||  |||||||||||||||||||| || ||  ||| |||||| |||||| ||||||    
T  4625954 ttgtttaagcaagacatcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttcttcttca 4626042  T

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Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 184 - 282
Target Start/End: Complemental strand, 16686413 - 16686315
Alignment:
Q  184 gtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttc 282  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||    
T  16686413 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctcgggtcttcgtccaccttc 16686315  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 184 - 294
Target Start/End: Complemental strand, 20863989 - 20863879
Alignment:
Q  184 gtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcg 283  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |||  | ||||| ||||||||||| ||||||     
T  20863989 gtcacttaagtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttct 20863890  T
Q  284 tcttcatctca 294  Q
    |||||| ||||    
T  20863889 tcttcaactca 20863879  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 198 - 289
Target Start/End: Original strand, 1674226 - 1674317
Alignment:
Q  198 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 289  Q
    ||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||| |||||| ||||||    
T  1674226 attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttca 1674317  T

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Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 198 - 281
Target Start/End: Complemental strand, 28000231 - 28000148
Alignment:
Q  198 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgcctt 281  Q
    ||||||||||| ||| || |||||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||| |||||    
T  28000231 attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctt 28000148  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 24103002 - 24103088
Alignment:
Q  201 ttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtctt 287  Q
    |||||||||||  ||||||||||| ||||| |||||||||||||||||| ||||||||| ||| |||| ||| || |||||| ||||    
T  24103002 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttctt 24103088  T

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Target: scaffold0288 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 3848 - 3762
Alignment:
Q  201 ttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtctt 287  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||||||| |||||| ||||| |||| |||||| |||||| ||||    
T  3848 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctt 3762  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 1281114 - 1281195
Alignment:
Q  198 attttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgcc 279  Q
    ||||||||||||||| |  |||||||||||||| || ||||||||||||||||||||||| ||||| |||| ||||||||||    
T  1281114 attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgcc 1281195  T

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Target: scaffold0477 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 4815 - 4727
Alignment:
Q  201 ttgtttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 289  Q
    |||||||||||  ||||||||||||||||| |||||||||||||||||||| |||||||  || |||| |||||| |||||| ||||||    
T  4815 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttca 4727  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 3086426 - 3086479
Alignment:
Q  204 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccacc 257  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccacc 3086479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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