View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4054_high_9 (Length: 258)
Name: NF4054_high_9
Description: NF4054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4054_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 42212518 - 42212272
Alignment:
| Q |
1 |
cctactttctcatttccatgtcatcatttgcaacaataacacagacaaagatgttcttctatcattcaaattacaagtaactgatccaaacaatgccttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212518 |
cctactttctcatttccatgtcatcatttgcaacaataacacagacaaagatattcttctatcattcaaattacaagtaactgatccaaacaatgccttg |
42212419 |
T |
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| Q |
101 |
tccagttggaaacaagattctaatcactgtacctggtacggtgtcaactgttccaaagttgatgaaagagttcaatctctaaccttacggggacttggcc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212418 |
tccagttggaaacaagattctaatcattgtacctggtatggtgtcaactgttccaaagttgatgaaagagttcaatctctaaccttacggggacttggcc |
42212319 |
T |
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| Q |
201 |
tctcaggtaaactaccctctaacctctccaacctcacttaccttcat |
247 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212318 |
tctctggtaaactaccctctaacctctccaacctcacttaccttcat |
42212272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 42224723 - 42224488
Alignment:
| Q |
12 |
atttccatgtcatcatttgcaacaataacacagacaaagatgttcttctatcattcaaattacaagtaactgatccaaacaatgccttgtccagttggaa |
111 |
Q |
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|||| |||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42224723 |
attttcatggcatcatttgcagcaataacactgacaaagatattcttctatcattcaaattacaagtaactgatccaaacaatgctttgtccagttggaa |
42224624 |
T |
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| Q |
112 |
acaagattctaatcactgtacctggtacggtgtcaactgttccaaagttgatgaaagagttcaatctctaaccttacggggacttggcctctcaggtaaa |
211 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
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| T |
42224623 |
acaagattctaatcattgtacctggtatggtgtcaactgttccaaagttgatgaaagagttcaatctctaaccttatcaggacttaaactctctggtaaa |
42224524 |
T |
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| Q |
212 |
ctaccctctaacctctccaacctcacttaccttcat |
247 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
42224523 |
ctaccccctaacctctccaacctcacttaccttcat |
42224488 |
T |
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