View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4054_low_10 (Length: 253)

Name: NF4054_low_10
Description: NF4054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4054_low_10
NF4054_low_10
[»] chr8 (5 HSPs)
chr8 (22-253)||(454519-454747)
chr8 (32-159)||(35743743-35743870)
chr8 (32-159)||(10685870-10685997)
chr8 (32-159)||(18867276-18867403)
chr8 (45-162)||(26299724-26299841)
[»] chr5 (7 HSPs)
chr5 (32-159)||(33789710-33789837)
chr5 (32-167)||(24557190-24557325)
chr5 (32-167)||(24598222-24598357)
chr5 (32-159)||(27448177-27448304)
chr5 (32-159)||(31398598-31398725)
chr5 (47-159)||(43595475-43595587)
chr5 (47-159)||(43628269-43628381)
[»] chr7 (7 HSPs)
chr7 (32-162)||(9186751-9186881)
chr7 (32-162)||(49090039-49090169)
chr7 (32-152)||(18412019-18412139)
chr7 (32-159)||(16883281-16883408)
chr7 (32-151)||(21987282-21987401)
chr7 (32-159)||(24262929-24263056)
chr7 (32-152)||(21644398-21644518)
[»] chr4 (3 HSPs)
chr4 (32-162)||(16625599-16625729)
chr4 (32-162)||(5146259-5146389)
chr4 (32-159)||(9226010-9226137)
[»] chr3 (7 HSPs)
chr3 (32-162)||(3325142-3325274)
chr3 (32-162)||(1309222-1309352)
chr3 (32-162)||(16262713-16262843)
chr3 (32-159)||(8515448-8515575)
chr3 (32-159)||(32478694-32478821)
chr3 (32-152)||(2673826-2673946)
chr3 (33-158)||(28490780-28490905)
[»] chr2 (2 HSPs)
chr2 (32-152)||(25394247-25394367)
chr2 (32-159)||(19347632-19347759)
[»] chr1 (2 HSPs)
chr1 (32-162)||(47100424-47100554)
chr1 (32-159)||(41396593-41396720)
[»] scaffold0197 (1 HSPs)
scaffold0197 (32-159)||(15915-16042)
[»] scaffold0006 (2 HSPs)
scaffold0006 (32-152)||(869-989)
scaffold0006 (32-152)||(9025-9145)
[»] chr6 (1 HSPs)
chr6 (32-152)||(14739178-14739298)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 253
Target Start/End: Original strand, 454519 - 454747
Alignment:
Q  22 aaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattac 121  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| |    
T  454519 aaggtgacaacatgttagtgaaagaggtttagtagaactagccaaacaaggttttttaggaagagaaaatttggataagctagaatttcgcaatcattgc 454618  T
Q  122 atactagacaaataacatagagtgaagtttgaaagtggtatacatttggatttttggattcttctttagatacttaatcacgggggatatactccccctc 221  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||  |||||    
T  454619 atactagacaaacaacatagagtgaagtttgaaagtggtatacattcggatttttggattcttctttagatacttactcac-ggggatatact--ccctc 454715  T
Q  222 tcgtgaacttttctccatctcttcatattcac 253  Q
    ||||||||||||||||||||||||||||||||    
T  454716 tcgtgaacttttctccatctcttcatattcac 454747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 35743870 - 35743743
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || || ||||||||||||||| |  | |||| |||||||| ||    
T  35743870 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggataagctagaattttgtgaacattgcatactaggca 35743771  T
Q  132 aataacatagagtgaagtttgaaagtgg 159  Q
    || ||||||| |||||||||| ||||||    
T  35743770 aacaacatagggtgaagtttggaagtgg 35743743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 159
Target Start/End: Original strand, 10685870 - 10685997
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  10685870 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgaacattgcatactaggca 10685969  T
Q  132 aataacatagagtgaagtttgaaagtgg 159  Q
    || ||||||| |||||||||| ||||||    
T  10685970 aacaacatagggtgaagtttggaagtgg 10685997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 159
Target Start/End: Original strand, 18867276 - 18867403
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| |||||||| |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| ||||||||  |    
T  18867276 catgttagtgaaaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgagcattgcatactaggaa 18867375  T
Q  132 aataacatagagtgaagtttgaaagtgg 159  Q
    || ||||||| |||||||||| ||||||    
T  18867376 aacaacatagggtgaagtttggaagtgg 18867403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 26299841 - 26299724
Alignment:
Q  45 gaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagacaaataacatagagt 144  Q
    |||||||||| ||| |||||||||||| |||  |||||| ||| || || || |||||||||||| |  | |||| |||||||| |||  |||||| |||    
T  26299841 gaggtttagttgaattagcaaaacaaggtttgataggaaaagataaattggacaagctagaattttgtgagcattgcatactaggcaagcaacataaagt 26299742  T
Q  145 gaagtttgaaagtggtat 162  Q
     |||||||  ||||||||    
T  26299741 aaagtttggtagtggtat 26299724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 33789837 - 33789710
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || || ||||||||||||||| | || |||| |||||||| ||    
T  33789837 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggataagctagaattttgtaaacattgcatactaggca 33789738  T
Q  132 aataacatagagtgaagtttgaaagtgg 159  Q
    || ||||||| |||||||||| ||||||    
T  33789737 aacaacatagggtgaagtttggaagtgg 33789710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 167
Target Start/End: Original strand, 24557190 - 24557325
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| |||||||||| |||||| |||||||| ||||||| |||  |||||| ||| || ||||| |||||||||||| |  | |||| ||||||||  |    
T  24557190 catgttagtgaaagagatttagttgaactagctaaacaaggtttgctaggaaaagataaattagacaagctagaattttgtgagcattgcatactaggaa 24557289  T
Q  132 aataacatagagtgaagtttgaaagtggtatacatt 167  Q
    |  ||||||| || |||||||| |||||||| ||||    
T  24557290 agcaacatagggtcaagtttgatagtggtatgcatt 24557325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 167
Target Start/End: Original strand, 24598222 - 24598357
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| |||||||||| |||||| |||||||| ||||||| |||  |||||| ||| || ||||| |||||||||||| |  | |||| ||||||||  |    
T  24598222 catgttagtgaaagagatttagttgaactagctaaacaaggtttgctaggaaaagataaattagacaagctagaattttgtgagcattgcatactaggaa 24598321  T
Q  132 aataacatagagtgaagtttgaaagtggtatacatt 167  Q
    |  ||||||| || |||||||| |||||||| ||||    
T  24598322 agcaacatagggtcaagtttgatagtggtatgcatt 24598357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 27448304 - 27448177
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  27448304 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgagcattgcatactaggca 27448205  T
Q  132 aataacatagagtgaagtttgaaagtgg 159  Q
    || ||||||| |||||||||| ||||||    
T  27448204 aacaacatagggtgaagtttggaagtgg 27448177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 159
Target Start/End: Original strand, 31398598 - 31398725
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  31398598 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgaacattgcatactaggca 31398697  T
Q  132 aataacatagagtgaagtttgaaagtgg 159  Q
    || ||||||| |||||||||| ||||||    
T  31398698 aacaacatagggtgaagtttggaagtgg 31398725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 43595587 - 43595475
Alignment:
Q  47 ggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagacaaataacatagagtga 146  Q
    |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| |||||||  |||| ||||||| ||||    
T  43595587 ggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgagcattgcatactaagcaaacaacatagggtga 43595488  T
Q  147 agtttgaaagtgg 159  Q
    |||||| ||||||    
T  43595487 agtttggaagtgg 43595475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 43628381 - 43628269
Alignment:
Q  47 ggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagacaaataacatagagtga 146  Q
    |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| |||||||  |||| ||||||| ||||    
T  43628381 ggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgagcattgcatactaagcaaacaacatagggtga 43628282  T
Q  147 agtttgaaagtgg 159  Q
    |||||| ||||||    
T  43628281 agtttggaagtgg 43628269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 9186751 - 9186881
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||| ||| || ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  9186751 catgttagtgaaagaggtttagttgaactagctaaacaaggttttctagtaaaagataaattggacaagctagaattttgtgagcattgcatactaggca 9186850  T
Q  132 aataacatagagtgaagtttgaaagtggtat 162  Q
    |  |||||||||| |||||||  ||||||||    
T  9186851 agcaacatagagtaaagtttggtagtggtat 9186881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 162
Target Start/End: Complemental strand, 49090169 - 49090039
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||||||||||||||| |||||| | ||||||| |||  |||||| ||| || || || |||||||||||| | || |||| |||||||| ||    
T  49090169 catgttagtgaaagaggtttagttgaactaactaaacaaggtttgctaggaaaagataaattggacaagctagaattttgtaagcattgcatactaggca 49090070  T
Q  132 aataacatagagtgaagtttgaaagtggtat 162  Q
    |  |||||||||| |||||||  ||||||||    
T  49090069 agcaacatagagtaaagtttggtagtggtat 49090039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 152
Target Start/End: Complemental strand, 18412139 - 18412019
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||  |||||| ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  18412139 catgttagtgaaagaggtttagttgaactagctaaacaaggtttgctaggaaaagataaattggacaagctagaattttgtgagcattgcatactaggca 18412040  T
Q  132 aataacatagagtgaagtttg 152  Q
    |  |||||||||| |||||||    
T  18412039 agcaacatagagtaaagtttg 18412019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 16883408 - 16883281
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || || ||||||||||||||| |  | |||| |||||||| ||    
T  16883408 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggataagctagaattttgtgaacattgcatactaggca 16883309  T
Q  132 aataacatagagtgaagtttgaaagtgg 159  Q
    || ||||||| |||||||||| ||||||    
T  16883308 aacaacatagggtgaagtttggaagtgg 16883281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 21987401 - 21987282
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| |||||||||||||||||  ||||||| ||||||| |||  |||||| ||| |  || || |||||||||||| | || |||| |||||||| ||    
T  21987401 catgttagtgaaagaggtttagttaaactagctaaacaaggtttgctaggaaaagatacattggacaagctagaattttgtaagcattgcatactaggca 21987302  T
Q  132 aataacatagagtgaagttt 151  Q
    || ||| |||||| ||||||    
T  21987301 aacaacgtagagtaaagttt 21987282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 159
Target Start/End: Original strand, 24262929 - 24263056
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  24262929 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgaacattgcatactaggca 24263028  T
Q  132 aataacatagagtgaagtttgaaagtgg 159  Q
    || ||||||| |||||||||| ||||||    
T  24263029 aacaacatagggtgaagtttggaagtgg 24263056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 152
Target Start/End: Complemental strand, 21644518 - 21644398
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| |||||||||| |||||| |||||||| |||||||||||  |||| | ||| || || || |||||||||||| |  | || | |||||||| ||    
T  21644518 catgttagtgaaagagatttagttgaactagctaaacaagatttgctagggaaagataaattggacaagctagaattttgtgagcaatgcatactaggca 21644419  T
Q  132 aataacatagagtgaagtttg 152  Q
    |  |||||| |||||||||||    
T  21644418 agcaacatatagtgaagtttg 21644398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 16625599 - 16625729
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||  |||||| ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  16625599 catgttagtgaaagaggtttagttgaactagctaaacaaggtttgctaggaaaagataaattggacaagctagaattttgtgagcattgcatactaggca 16625698  T
Q  132 aataacatagagtgaagtttgaaagtggtat 162  Q
    |  |||||||||| |||||||  ||||||||    
T  16625699 agcaacatagagtaaagtttggtagtggtat 16625729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 162
Target Start/End: Complemental strand, 5146389 - 5146259
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||  ||  || ||| || || || ||| |||||||| |  | |||| |||||||| ||    
T  5146389 catgttagtgaaagaggtttagttgaactagctaaacaagatttgctaaaaaaagataaattggacaagttagaattttgtgagcattgcatactaggca 5146290  T
Q  132 aataacatagagtgaagtttgaaagtggtat 162  Q
    |  |||||||||| |||||||  ||||||||    
T  5146289 agcaacatagagtaaagtttggtagtggtat 5146259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 159
Target Start/End: Original strand, 9226010 - 9226137
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || ||  | |||||||||||| |  | |||| |||||||| ||    
T  9226010 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattgaacaagctagaattttgtgagcattgcatactaggca 9226109  T
Q  132 aataacatagagtgaagtttgaaagtgg 159  Q
    || ||||||| |||||||||| ||||||    
T  9226110 aacaacatagggtgaagtttggaagtgg 9226137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 3325142 - 3325274
Alignment:
Q  32 catgtcagtgaaagaggttta--gtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactaga 129  Q
    ||||| |||||||||||||||  || |||||||| ||||||||||| ||||||| ||| || || || |||||||||||| |  | |||| ||||||||     
T  3325142 catgttagtgaaagaggtttatagttgaactagctaaacaagatttgttaggaaaagataaattggacaagctagaattttgtgagcattgcatactagg 3325241  T
Q  130 caaataacatagagtgaagtttgaaagtggtat 162  Q
    |||  |||||||||| |||||||  ||||||||    
T  3325242 caagcaacatagagtaaagtttggtagtggtat 3325274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 162
Target Start/End: Complemental strand, 1309352 - 1309222
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||  |||||| ||| || || || |||||||||||| |  | |||| ||||||||  |    
T  1309352 catgttagtgaaagaggtttagttgaactagctaaacaaggtttgctaggaaaagataaattggacaagctagaattttgtgagcattgcatactaggaa 1309253  T
Q  132 aataacatagagtgaagtttgaaagtggtat 162  Q
    |  |||||||||| |||||||  ||||||||    
T  1309252 agcaacatagagtaaagtttggtagtggtat 1309222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 162
Target Start/End: Complemental strand, 16262843 - 16262713
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||| |||||| | | || || || |||||||||||| |  | |||| |||||||| ||    
T  16262843 catgttagtgaaagaggtttagttgaactagccaaacaaggttttctaggaaaaaataaattggacaagctagaattttgtgagcattgcatactaggca 16262744  T
Q  132 aataacatagagtgaagtttgaaagtggtat 162  Q
       |||||||||| |||||||  ||||||||    
T  16262743 ggcaacatagagtaaagtttggtagtggtat 16262713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 8515575 - 8515448
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  8515575 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgaacattgcatactaggca 8515476  T
Q  132 aataacatagagtgaagtttgaaagtgg 159  Q
    || ||||||| |||||||||| ||||||    
T  8515475 aacaacatagggtgaagtttggaagtgg 8515448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 32478821 - 32478694
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  32478821 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgaacattgcatactaggca 32478722  T
Q  132 aataacatagagtgaagtttgaaagtgg 159  Q
    || ||||||| |||||||||| ||||||    
T  32478721 aacaacatagggtgaagtttggaagtgg 32478694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 152
Target Start/End: Original strand, 2673826 - 2673946
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  2673826 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgaacattgcatactaggca 2673925  T
Q  132 aataacatagagtgaagtttg 152  Q
    || ||||||| ||||||||||    
T  2673926 aacaacatagggtgaagtttg 2673946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 158
Target Start/End: Original strand, 28490780 - 28490905
Alignment:
Q  33 atgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagacaa 132  Q
    |||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || ||  | |||||||||||| |  | |||| |||||||| |||    
T  28490780 atgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattgtacaagctagaattttgtgagcattgcatactaggcaa 28490879  T
Q  133 ataacatagagtgaagtttgaaagtg 158  Q
    | ||||||| |||||||||| |||||    
T  28490880 acaacatagggtgaagtttggaagtg 28490905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 152
Target Start/End: Complemental strand, 25394367 - 25394247
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||  |||||| ||| || || || |||||||||||| || | |||| ||| |||| ||    
T  25394367 catgttagtgaaagaggtttagttgaactagctaaacaaggtttgctaggaaaagataaattggacaagctagaattttgcgagcattgcatgctaggca 25394268  T
Q  132 aataacatagagtgaagtttg 152  Q
    |  |||||||||| |||||||    
T  25394267 agcaacatagagtaaagtttg 25394247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 19347759 - 19347632
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || || ||||||||||||||| |  | |||| |||||||| ||    
T  19347759 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggataagctagaattttgtgaacattgcatactaggca 19347660  T
Q  132 aataacatagagtgaagtttgaaagtgg 159  Q
    || ||||||| |||||||||| ||||||    
T  19347659 aacaacatagggtgaagtttggaagtgg 19347632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 47100424 - 47100554
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||  |||||| ||| || || || |||||||||||| |  | |||| |||| ||| ||    
T  47100424 catgttagtgaaagaggtttagttgaactagctaaacaaggtttgctaggaaaagataaattggacaagctagaattttgtgaacattgcatattaggca 47100523  T
Q  132 aataacatagagtgaagtttgaaagtggtat 162  Q
    |  |||||||||| |||||||  ||||||||    
T  47100524 agcaacatagagtaaagtttggtagtggtat 47100554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 41396720 - 41396593
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  41396720 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgagcattgcatactaggca 41396621  T
Q  132 aataacatagagtgaagtttgaaagtgg 159  Q
    || ||||||| |||||||||| ||||||    
T  41396620 aacaacatagggtgaagtttggaagtgg 41396593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 159
Target Start/End: Original strand, 15915 - 16042
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  15915 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgaacattgcatactaggca 16014  T
Q  132 aataacatagagtgaagtttgaaagtgg 159  Q
    || ||||||| |||||||||| ||||||    
T  16015 aacaacatagggtgaagtttggaagtgg 16042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 152
Target Start/End: Complemental strand, 989 - 869
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||||||||||||||| |||||||| ||||| | |||  |||||| ||| || || || |||||||||||| |  | |||| |||||||  ||    
T  989 catgttagtgaaagaggtttagttgaactagctaaacagggtttgctaggaaaagataaattggacaagctagaattttgtgagcattgcatactaagca 890  T
Q  132 aataacatagagtgaagtttg 152  Q
    |  |||||||||| |||||||    
T  889 agaaacatagagtaaagtttg 869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 152
Target Start/End: Complemental strand, 9145 - 9025
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||||||||||||||| |||||||| ||||| | |||  |||||| ||| || || || |||||||||||| |  | |||| |||||||  ||    
T  9145 catgttagtgaaagaggtttagttgaactagctaaacagggtttgctaggaaaagataaattggacaagctagaattttgtgagcattgcatactaagca 9046  T
Q  132 aataacatagagtgaagtttg 152  Q
    |  |||||||||| |||||||    
T  9045 agaaacatagagtaaagtttg 9025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 152
Target Start/End: Original strand, 14739178 - 14739298
Alignment:
Q  32 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 131  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  14739178 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgagcattgcatactaggca 14739277  T
Q  132 aataacatagagtgaagtttg 152  Q
    || ||||||| ||||||||||    
T  14739278 aacaacatagggtgaagtttg 14739298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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