View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4054_low_12 (Length: 227)

Name: NF4054_low_12
Description: NF4054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4054_low_12
NF4054_low_12
[»] chr1 (14 HSPs)
chr1 (1-227)||(1843836-1844062)
chr1 (42-131)||(37097371-37097461)
chr1 (30-134)||(15214303-15214408)
chr1 (19-82)||(12189981-12190044)
chr1 (19-135)||(13208586-13208704)
chr1 (19-125)||(16222763-16222870)
chr1 (30-110)||(5911683-5911764)
chr1 (30-80)||(3399653-3399703)
chr1 (30-99)||(28636915-28636984)
chr1 (30-125)||(51758738-51758834)
chr1 (31-82)||(897484-897535)
chr1 (4-82)||(18308177-18308255)
chr1 (194-223)||(1869462-1869491)
chr1 (30-62)||(15204643-15204675)
[»] chr5 (17 HSPs)
chr5 (30-133)||(17037520-17037624)
chr5 (19-131)||(31068971-31069083)
chr5 (19-131)||(5079072-5079185)
chr5 (19-112)||(9354397-9354491)
chr5 (19-131)||(7410803-7410916)
chr5 (30-99)||(12042196-12042265)
chr5 (30-110)||(30786267-30786348)
chr5 (30-82)||(9333580-9333632)
chr5 (30-131)||(23679420-23679522)
chr5 (30-131)||(23855289-23855391)
chr5 (19-72)||(42076086-42076139)
chr5 (32-72)||(10869476-10869516)
chr5 (30-82)||(40402028-40402080)
chr5 (32-82)||(37233061-37233111)
chr5 (48-112)||(18191886-18191951)
chr5 (30-78)||(19985028-19985076)
chr5 (6-110)||(31571029-31571138)
[»] chr4 (11 HSPs)
chr4 (4-131)||(47066027-47066155)
chr4 (4-131)||(53300330-53300458)
chr4 (19-133)||(43600244-43600359)
chr4 (30-133)||(1152021-1152125)
chr4 (4-80)||(4904133-4904209)
chr4 (1-82)||(4881059-4881140)
chr4 (30-132)||(1684971-1685074)
chr4 (31-82)||(24559015-24559066)
chr4 (33-79)||(48464072-48464118)
chr4 (35-78)||(21539295-21539338)
chr4 (30-62)||(21317487-21317519)
[»] chr2 (10 HSPs)
chr2 (4-131)||(30266982-30267110)
chr2 (30-129)||(44920939-44921038)
chr2 (19-82)||(41573422-41573485)
chr2 (19-111)||(31342724-31342817)
chr2 (30-78)||(40016624-40016672)
chr2 (30-82)||(11017486-11017538)
chr2 (4-72)||(24479191-24479259)
chr2 (4-59)||(7702481-7702536)
chr2 (30-112)||(7718183-7718266)
chr2 (30-82)||(15513696-15513748)
[»] chr8 (17 HSPs)
chr8 (19-131)||(25637623-25637736)
chr8 (19-131)||(25638786-25638899)
chr8 (19-132)||(28249083-28249197)
chr8 (19-133)||(45356120-45356235)
chr8 (19-131)||(17634479-17634592)
chr8 (30-131)||(5528722-5528824)
chr8 (1-82)||(5650935-5651016)
chr8 (20-112)||(6403591-6403684)
chr8 (30-132)||(19369929-19370032)
chr8 (4-82)||(14997650-14997728)
chr8 (30-131)||(19448427-19448529)
chr8 (30-131)||(19532547-19532649)
chr8 (30-99)||(29345443-29345512)
chr8 (19-79)||(6801838-6801898)
chr8 (30-131)||(18766896-18766998)
chr8 (30-72)||(6223440-6223482)
chr8 (30-82)||(31347378-31347430)
[»] chr7 (13 HSPs)
chr7 (1-82)||(26608529-26608610)
chr7 (19-132)||(9242492-9242606)
chr7 (30-131)||(26224997-26225099)
chr7 (4-82)||(30089764-30089842)
chr7 (4-110)||(26621084-26621191)
chr7 (30-131)||(4685422-4685524)
chr7 (30-131)||(26205434-26205536)
chr7 (19-110)||(26619112-26619202)
chr7 (30-131)||(10022103-10022205)
chr7 (4-79)||(20277353-20277428)
chr7 (20-78)||(8241630-8241688)
chr7 (19-72)||(16086526-16086579)
chr7 (38-82)||(3374330-3374374)
[»] chr6 (13 HSPs)
chr6 (19-131)||(16734784-16734897)
chr6 (19-132)||(6684072-6684185)
chr6 (19-131)||(11936775-11936888)
chr6 (30-131)||(15361694-15361796)
chr6 (19-123)||(12591820-12591925)
chr6 (30-82)||(29667934-29667986)
chr6 (30-131)||(14669365-14669467)
chr6 (30-131)||(17719742-17719844)
chr6 (20-132)||(15690416-15690529)
chr6 (19-99)||(11948755-11948835)
chr6 (30-82)||(23264515-23264567)
chr6 (30-62)||(23904371-23904403)
chr6 (34-62)||(9631178-9631206)
[»] chr3 (12 HSPs)
chr3 (19-131)||(7407762-7407875)
chr3 (19-126)||(13845976-13846084)
chr3 (30-122)||(1627966-1628059)
chr3 (30-131)||(2550145-2550247)
chr3 (30-82)||(26707888-26707940)
chr3 (30-131)||(1654555-1654657)
chr3 (30-99)||(16457350-16457419)
chr3 (19-82)||(2943222-2943285)
chr3 (19-82)||(5498507-5498570)
chr3 (19-62)||(26735683-26735726)
chr3 (19-79)||(9633450-9633510)
chr3 (4-82)||(36035318-36035396)
[»] scaffold0576 (1 HSPs)
scaffold0576 (30-131)||(6678-6780)
[»] scaffold0684 (1 HSPs)
scaffold0684 (19-131)||(755-868)
[»] scaffold0069 (1 HSPs)
scaffold0069 (19-131)||(40706-40819)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1844062 - 1843836
Alignment:
Q  1 tgcaactaaagcccttcggtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttta 100  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1844062 tgcaattaaagcccttcagtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaacatttttcttattccagttacaatttta 1843963  T
Q  101 agtgttactaaaggtcattattgtagtagtgatcattcaatgattctcataaacattaaaactacacgatacaaccgtccaatatacaataccaataatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1843962 agtgttactaaaggtcattattgtagtagtgatcattcaatgattctcataaacattaaaactacacgatacaaccgtccaatatacaataccaataatt 1843863  T
Q  201 ggatttttaggaatattccataagttt 227  Q
    |||||||||||||||||||||||||||    
T  1843862 ggatttttaggaatattccataagttt 1843836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 37097371 - 37097461
Alignment:
Q  42 ttgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagtagtg 131  Q
    |||||||||||||||||||||  |||||||| |||||||||  |  |||||||||||| ||||||||||||| ||||||||||||||||||    
T  37097371 ttgttcaaatgttactaaattttatcagtaacatttttcttgatttagttacaattttcaagtgttactaaatgtcattattgtagtagtg 37097461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 15214408 - 15214303
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    |||||| ||||||||||||||| |||||||||| ||| |||||||||||||||  |  |||| ||||||| ||||||||||||| | | |||||||||||    
T  15214408 tttacccaacaattgttcaaatattactaaatttaattagtaaaatttttcttgatttagttgcaattttcaagtgttactaaatgccgttattgtagta 15214309  T
Q  129 gtgatc 134  Q
    ||||||    
T  15214308 gtgatc 15214303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 12190044 - 12189981
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    |||||| ||| ||||||||||||||||||||||||||||||||| ||| ||||| |||||||||    
T  12190044 gtaacacgggctttacctaacaattgttcaaatgttactaaatttaattagtaatatttttctt 12189981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 13208704 - 13208586
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt--aagtgttactaaaggtc 116  Q
    |||||| ||| ||||||||||||| |||||| || ||||||||| ||| ||||| |||||||||| |  | ||||||||||  |||| ||||||||  ||    
T  13208704 gtaacacgggttttacctaacaatggttcaagtggtactaaatttaattagtaacatttttcttaatttaattacaattttcaaagtattactaaatatc 13208605  T
Q  117 attattgtagtagtgatca 135  Q
    || ||||||||||||||||    
T  13208604 atcattgtagtagtgatca 13208586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 16222870 - 16222763
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||| ||| |||||||||||||| ||||| ||||||||||||  || ||||| |||||||||  |  |||||||||||| || |||||||||| ||||    
T  16222870 gtaacacgggctttacctaacaattattcaagtgttactaaattttattagtaacatttttcttgatttagttacaattttcaaatgttactaaatgtca 16222771  T
Q  118 ttattgta 125  Q
    ||||||||    
T  16222770 ttattgta 16222763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 5911683 - 5911764
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttacta 110  Q
    |||||||||||||||||||| |||||||||||| ||||||||| |||||||||  |  ||||| |||||| |||||||||||    
T  5911683 tttacctaacaattgttcaagtgttactaaatttaatcagtaacatttttcttgatttagttaaaattttcaagtgttacta 5911764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 3399703 - 3399653
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttc 80  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  3399703 tttacctaacaattgttcaaatgttactaaatttaattagtaacatttttc 3399653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 28636984 - 28636915
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt 99  Q
    |||||||||||||| |||||||||||||||||| ||| ||||| |||||||||  |  ||||||||||||    
T  28636984 tttacctaacaattattcaaatgttactaaattgaattagtaacatttttcttgatttagttacaatttt 28636915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 51758834 - 51758738
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgta 125  Q
    ||||||||| |||||||| | |||| ||||||| ||| | ||| |||||||||  |  |||||||||||| || |||||||||| ||||||||||||    
T  51758834 tttacctaataattgttcgagtgttgctaaatttaattactaacatttttcttgatttagttacaattttcaaatgttactaaatgtcattattgta 51758738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 897535 - 897484
Alignment:
Q  31 ttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    ||||||||||||||||||| |||||||||||| ||| || || |||||||||    
T  897535 ttacctaacaattgttcaattgttactaaatttaattaggaacatttttctt 897484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 18308255 - 18308177
Alignment:
Q  4 aactaaagcccttcggtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    |||||||||||||| ||||||  || ||||||||||||||||  |||||||| ||| |  |||| |||| |||||||||    
T  18308255 aactaaagcccttcagtaacacaggctttacctaacaattgtagaaatgttaataattgtaatctgtaacatttttctt 18308177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 1869491 - 1869462
Alignment:
Q  194 aataattggatttttaggaatattccataa 223  Q
    ||||||||||||||||||||||||||||||    
T  1869491 aataattggatttttaggaatattccataa 1869462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 15204675 - 15204643
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaatt 62  Q
    |||||||||||||||||||| ||||||||||||    
T  15204675 tttacctaacaattgttcaagtgttactaaatt 15204643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 17037624 - 17037520
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| |||||||||  |  |||||| ||||| ||||||||||||| |||||||||||||||    
T  17037624 tttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagttacgattttcaagtgttactaaatgtcattattgtagta 17037525  T
Q  129 gtgat 133  Q
    |||||    
T  17037524 gtgat 17037520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 31068971 - 31069083
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||| ||| |||||||||||||||||||| |||||||||||| ||| ||||| |||||||||  |  |||||||||||| ||||||||||||| ||||    
T  31068971 gtaacacgggctttacctaacaattgttcaa-tgttactaaatttaattagtaacatttttcttgatttagttacaatttttaagtgttactaaatgtca 31069069  T
Q  118 ttattgtagtagtg 131  Q
    ||||||||||||||    
T  31069070 ttattgtagtagtg 31069083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 5079072 - 5079185
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||| ||| |||||||||||||||||||| |||| ||||||| ||| ||||| |||||||||  |  |||||||||||| ||||||||||||  ||||    
T  5079072 gtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttactaattgtca 5079171  T
Q  118 ttattgtagtagtg 131  Q
    ||||||||||||||    
T  5079172 ttattgtagtagtg 5079185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 9354397 - 9354491
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaa 112  Q
    |||||||||| ||||||||||||||| |||||||||| |||||| ||| ||||| |||||||||  | ||||||||||||| || ||||||||||    
T  9354397 gtaacatgggctttacctaacaattgctcaaatgttattaaatttaattagtaacatttttcttgattcagttacaattttcaattgttactaaa 9354491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 7410916 - 7410803
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||| ||| |||||||||||||||||||| |||| ||||||| ||| ||||| |||||| ||  |  |||||||||||| || |||||||||  ||||    
T  7410916 gtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacattttttttgatttagttacaattttgaaatgttactaattgtca 7410817  T
Q  118 ttattgtagtagtg 131  Q
    ||||||||||||||    
T  7410816 ttattgtagtagtg 7410803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 12042196 - 12042265
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt 99  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||  |  ||||||||||||    
T  12042196 tttacctaacaattgttcaaatgttactaaattgaatcagtaacatttttcttgatttagttacaatttt 12042265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 30786348 - 30786267
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttacta 110  Q
    |||||||||||||| |||||||||||||||||| ||||||||| |||||||||  |  |||||||||||| |||||||||||    
T  30786348 tttacctaacaattattcaaatgttactaaattgaatcagtaacatttttcttgattaagttacaattttcaagtgttacta 30786267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 9333580 - 9333632
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||    
T  9333580 tttacctaacaattgctcaaatgttactaaatttaattagtaacatttttctt 9333632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 23679522 - 23679420
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    |||| |||| |||||||| |||||| | ||||| ||| | ||| |||||||||  |  |||||||||||| ||||||| ||||| |||||||||||||||    
T  23679522 tttatctaataattgttcgaatgttgcaaaatttaattaataacatttttcttgatttagttacaattttcaagtgttgctaaatgtcattattgtagta 23679423  T
Q  129 gtg 131  Q
    |||    
T  23679422 gtg 23679420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 23855289 - 23855391
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    |||| |||| |||||||| |||||| | ||||| ||| | ||| |||||||||  |  |||||||||||| ||||||| ||||| |||||||||||||||    
T  23855289 tttatctaataattgttcgaatgttgcaaaatttaattaataacatttttcttgatttagttacaattttcaagtgttgctaaatgtcattattgtagta 23855388  T
Q  129 gtg 131  Q
    |||    
T  23855389 gtg 23855391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 42076139 - 42076086
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaa 72  Q
    |||||||||  |||| |||||||||||||||||||||||||||| ||| |||||    
T  42076139 gtaacatggactttatctaacaattgttcaaatgttactaaatttaattagtaa 42076086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 10869516 - 10869476
Alignment:
Q  32 tacctaacaattgttcaaatgttactaaattcaatcagtaa 72  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  10869516 tacctaacaattgttcaaatgttactaaatttaattagtaa 10869476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 40402028 - 40402080
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    ||||||||||||||||||||| || |||||||| ||| ||||| |||||||||    
T  40402028 tttacctaacaattgttcaaacgtaactaaatttaattagtaacatttttctt 40402080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 37233111 - 37233061
Alignment:
Q  32 tacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    ||||||||||||| ||||||||||||||||| ||| |||||  ||||||||    
T  37233111 tacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 37233061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 18191886 - 18191951
Alignment:
Q  48 aaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaa 112  Q
    ||||||||||||||| ||| ||||| |||||||||| |  |||||||||||| || ||||||||||    
T  18191886 aaatgttactaaatttaattagtaacatttttcttaatttagttacaattttcaattgttactaaa 18191951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 19985076 - 19985028
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttt 78  Q
    |||||||||||||| |||||||||||||||||  ||| ||||| |||||    
T  19985076 tttacctaacaattattcaaatgttactaaatctaattagtaacatttt 19985028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 31571138 - 31571029
Alignment:
Q  6 ctaaagcccttcggtaacatggggtttacctaacaattgttc----aaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-a 100  Q
    ||||||| |||  |||||||||| |||||||||||||||| |    | |||||||||| || ||||||||| ||||||||| ||  | | |||||||| |    
T  31571138 ctaaagctctttagtaacatgggttttacctaacaattgtacatatatatgttactaattttaatcagtaacatttttcttgttttaataacaattttca 31571039  T
Q  101 agtgttacta 110  Q
    ||||||||||    
T  31571038 agtgttacta 31571029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 47066027 - 47066155
Alignment:
Q  4 aactaaagcccttcggtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aag 102  Q
    ||||||| | ||| ||||||| ||| |||||||||||||||||||  |||||||||||| ||| | ||| |||||||||  |  |||||||||||| |||    
T  47066027 aactaaaactctttggtaacacgggctttacctaacaattgttcaggtgttactaaatttaattactaacatttttcttgatttagttacaattttcaag 47066126  T
Q  103 tgttactaaaggtcattattgtagtagtg 131  Q
    |||||||||| ||||||||||||||||||    
T  47066127 tgttactaaatgtcattattgtagtagtg 47066155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 53300458 - 53300330
Alignment:
Q  4 aactaaagcccttcggtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aag 102  Q
    ||||||| | ||| ||||||| ||| ||||||||||||||||| |  |||||||||||| ||| | ||| |||||||||  |  | |||||||||| |||    
T  53300458 aactaaaactctttggtaacacgggctttacctaacaattgtttaggtgttactaaatttaattactaacatttttcttgatttaattacaattttcaag 53300359  T
Q  103 tgttactaaaggtcattattgtagtagtg 131  Q
    |||||||||| ||||||||||||||||||    
T  53300358 tgttactaaatgtcattattgtagtagtg 53300330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 43600359 - 43600244
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||| ||| |||||||||||||||||||| | || ||||||| ||| ||||| |||||||||  |  |||||||||||| ||||||||| ||  | ||    
T  43600359 gtaacacgggctttacctaacaattgttcaagttttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttaccaattgcca 43600260  T
Q  118 ttattgtagtagtgat 133  Q
    ||||||||||||||||    
T  43600259 ttattgtagtagtgat 43600244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 1152125 - 1152021
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    |||| ||||||||||||  | |||| | ||||| ||| ||||| |||||||||| |  |||||||||||| ||||||| ||||| |||||||||||||||    
T  1152125 tttatctaacaattgtttgagtgttgcaaaatttaattagtaacatttttcttaatttagttacaattttcaagtgttgctaaatgtcattattgtagta 1152026  T
Q  129 gtgat 133  Q
    |||||    
T  1152025 gtgat 1152021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 4904133 - 4904209
Alignment:
Q  4 aactaaagcccttcggtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttc 80  Q
    ||||||||| |||  |||||| | | |||||||||||||||| |||||||||||||||| ||||||||| |||||||    
T  4904133 aactaaagcactttagtaacaagtgctttacctaacaattgtacaaatgttactaaatttaatcagtaacatttttc 4904209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 4881059 - 4881140
Alignment:
Q  1 tgcaactaaagcccttcggtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    |||||||||||| |||  |||||| ||  |||||||||||||| | ||||| |||||||||| ||||||||| |||||||||    
T  4881059 tgcaactaaagcactttagtaacacggactttacctaacaattatacaaatattactaaatttaatcagtaacatttttctt 4881140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 1684971 - 1685074
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    |||| ||||||||||||| | |||| | ||||| ||| ||||| |||||||||  |  |||||||||||| ||||||| ||||| ||||||||| |||||    
T  1684971 tttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttgctaaatgtcattattatagta 1685070  T
Q  129 gtga 132  Q
    ||||    
T  1685071 gtga 1685074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 24559015 - 24559066
Alignment:
Q  31 ttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    |||||||||||| ||||||||||||||||||| ||| ||||| |||||||||    
T  24559015 ttacctaacaatcgttcaaatgttactaaatttaattagtaacatttttctt 24559066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 48464118 - 48464072
Alignment:
Q  33 acctaacaattgttcaaatgttactaaattcaatcagtaaaattttt 79  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||||    
T  48464118 acctaacaattgttcaaatgttactaaatttaattagtaacattttt 48464072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 21539295 - 21539338
Alignment:
Q  35 ctaacaattgttcaaatgttactaaattcaatcagtaaaatttt 78  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||    
T  21539295 ctaacaattgtttaaatgttactaaatttaatcagtaacatttt 21539338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 21317519 - 21317487
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaatt 62  Q
    ||||||||||||||||| |||||||||||||||    
T  21317519 tttacctaacaattgttgaaatgttactaaatt 21317487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 30267110 - 30266982
Alignment:
Q  4 aactaaagcccttcggtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aag 102  Q
    ||||||| | ||| ||||||| ||| |||||||||||||||||||  |||||||||||| ||| | ||| |||||||||  |  |||||||||||| |||    
T  30267110 aactaaaactctttggtaacacgggctttacctaacaattgttcaggtgttactaaatttaattactaacatttttcttgatttagttacaattttcaag 30267011  T
Q  103 tgttactaaaggtcattattgtagtagtg 131  Q
    |||||||||| ||||||||||||||||||    
T  30267010 tgttactaaatgtcattattgtagtagtg 30266982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 44921038 - 44920939
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    ||||||||||||||||| |  |||||||||||| ||| ||||| |||||| | |||  |||||||||||| ||||||||||||| |||||||||||||||    
T  44921038 tttacctaacaattgtttaggtgttactaaatttaattagtaacatttttttgattt-agttacaattttcaagtgttactaaatgtcattattgtagta 44920940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 41573485 - 41573422
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    |||||| ||||||||||||||||||||| || |||||||||||| ||| ||||| |||||||||    
T  41573485 gtaacacggggtttacctaacaattgtttaactgttactaaatttaattagtaacatttttctt 41573422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 31342724 - 31342817
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaa 111  Q
    |||||| ||| |||| ||||||||||||||| |||| ||||||| ||| ||||| |||||||||  |  |||||||||||| ||||||||||||    
T  31342724 gtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttactaa 31342817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 40016672 - 40016624
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttt 78  Q
    |||||||||||||| |||||||||||||||||| ||||||||| |||||    
T  40016672 tttacctaacaattattcaaatgttactaaatttaatcagtaacatttt 40016624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 11017538 - 11017486
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||| | |||||||    
T  11017538 tttacctaacaattggtcaaatgttactaaatttaattagtaacaattttctt 11017486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 24479259 - 24479191
Alignment:
Q  4 aactaaagcccttcggtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaa 72  Q
    ||||||||| |||  |||||| | | ||||||||| ||||||||||||||||||||||| ||| |||||    
T  24479259 aactaaagctctttagtaacacgagctttacctaagaattgttcaaatgttactaaatttaattagtaa 24479191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 7702536 - 7702481
Alignment:
Q  4 aactaaagcccttcggtaacatggggtttacctaacaattgttcaaatgttactaa 59  Q
    ||||||||| |||  |||| ||||| |||||||||||||||| |||||||||||||    
T  7702536 aactaaagctctttagtaatatgggctttacctaacaattgtacaaatgttactaa 7702481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 7718266 - 7718183
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaa 112  Q
    |||| ||||||||||||||  |||||||||||| ||| ||||| |||||||||  |  |||||||||||| |||| ||||||||    
T  7718266 tttatctaacaattgttcatgtgttactaaatttaattagtaatatttttcttgatttagttacaattttcaagtattactaaa 7718183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 15513748 - 15513696
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    |||||||||||||||||||| |||||| ||||| ||  ||||| |||||||||    
T  15513748 tttacctaacaattgttcaagtgttacaaaatttaactagtaacatttttctt 15513696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 25637736 - 25637623
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||| ||| |||||||||||||||||| | |||| ||||||| ||| ||||| | |||||||| |  |||||||||||| ||||||||||||| ||||    
T  25637736 gtaacacgggctttacctaacaattgttcgagtgttgctaaatttaattagtaacagttttcttaatttagttacaattttcaagtgttactaaatgtca 25637637  T
Q  118 ttattgtagtagtg 131  Q
    ||||||||||||||    
T  25637636 ttattgtagtagtg 25637623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 25638899 - 25638786
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||||||| |||||||||||||||||||| |||| ||||||| ||| ||||| |||||||||  |  |||||||||||| ||||||||||||  | ||    
T  25638899 gtaacatgggttttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttactaattgcca 25638800  T
Q  118 ttattgtagtagtg 131  Q
    ||||||||||||||    
T  25638799 ttattgtagtagtg 25638786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 28249083 - 28249197
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||| ||| |||||||||||||||||||| |||| ||||||| ||| ||||| |||||||||  |  |||||||||||| ||||||||||||  | ||    
T  28249083 gtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttactaagtgcca 28249182  T
Q  118 ttattgtagtagtga 132  Q
    |||||||||||||||    
T  28249183 ttattgtagtagtga 28249197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 45356120 - 45356235
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||| ||| |||||||||||||||||||| |||| ||||||| ||| ||||| |||||||||  |  |||||||||||| ||||||||| ||  | ||    
T  45356120 gtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttaccaattgcca 45356219  T
Q  118 ttattgtagtagtgat 133  Q
    ||||||||||||||||    
T  45356220 ttattgtagtagtgat 45356235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 17634479 - 17634592
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||| ||| |||||||| ||||||||||| ||||| |||||| ||| ||||| |||||||||  |  |||||||||||| || |||||||||| ||||    
T  17634479 gtaacacgggctttacctatcaattgttcaagtgttattaaatttaattagtaacatttttcttgatttagttacaattttcaaatgttactaaatgtca 17634578  T
Q  118 ttattgtagtagtg 131  Q
    ||||||||| ||||    
T  17634579 ttattgtaggagtg 17634592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 5528824 - 5528722
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    |||| ||||||||||||  | |||| ||||||| ||| ||||| |||||||||  |  |||||||||||| ||||||||||||| |||||||||||||||    
T  5528824 tttatctaacaattgtttgagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttactaaatgtcattattgtagta 5528725  T
Q  129 gtg 131  Q
    |||    
T  5528724 gtg 5528722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 5650935 - 5651016
Alignment:
Q  1 tgcaactaaagcccttcggtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    ||||||||||||  ||  |||||| ||| ||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||    
T  5650935 tgcaactaaagcttttttgtaacaagggttttacctaacaattgttcaaatgttgctaaattgaattagtaacatttttctt 5651016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 6403684 - 6403591
Alignment:
Q  20 taacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttac-aattttaagtgttactaaa 112  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||| |  |||||| ||||| || ||||||||||    
T  6403684 taacacgggctttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttaatttagttacaaatttcaattgttactaaa 6403591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 19369929 - 19370032
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    |||| ||||||||||||| | |||| | ||||| ||| ||||| |||||||||  |  |||||||||||| ||||||| ||||| |||||||||||||||    
T  19369929 tttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttgctaaatgtcattattgtagta 19370028  T
Q  129 gtga 132  Q
    ||||    
T  19370029 gtga 19370032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 14997728 - 14997650
Alignment:
Q  4 aactaaagcccttcggtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    ||||||||| |||  |||||||||| |||||||||||||| | ||||||||||||| || || |||||| |||||||||    
T  14997728 aactaaagctctttagtaacatgggttttacctaacaattctacaaatgttactaattttaaccagtaacatttttctt 14997650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 19448529 - 19448427
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    |||| ||||||||||||| | |||| | ||||| ||| ||||| |||||||||  |  |||||||||||| ||||||| ||||| |||||||||||||||    
T  19448529 tttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttgctaaatgtcattattgtagta 19448430  T
Q  129 gtg 131  Q
    |||    
T  19448429 gtg 19448427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 19532547 - 19532649
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    |||| ||||||||||||| | |||| | ||||| ||| ||||| |||||||||  |  |||||||||||| ||||||| ||||| |||||||||||||||    
T  19532547 tttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttgctaaatgtcattattgtagta 19532646  T
Q  129 gtg 131  Q
    |||    
T  19532647 gtg 19532649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 29345512 - 29345443
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt 99  Q
    ||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||  |  ||||||||||||    
T  29345512 tttacctaacaattgttcaaaggttactaaatttaattagtaatatttttcttgatttagttacaatttt 29345443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 6801838 - 6801898
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaattttt 79  Q
    |||||| ||| |||||||||||||||||||| |||||||||||| ||| ||||| ||||||    
T  6801838 gtaacaggggctttacctaacaattgttcaactgttactaaatttaattagtaacattttt 6801898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 18766998 - 18766896
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    |||||||||||||||||  | |||| | ||||| ||| | ||| |||||||||  |  |||||||||||| ||||||| ||||| |||||||||||||||    
T  18766998 tttacctaacaattgtttgagtgttgcaaaatttaattaataatatttttcttgatttagttacaattttcaagtgttgctaaatgtcattattgtagta 18766899  T
Q  129 gtg 131  Q
    |||    
T  18766898 gtg 18766896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 6223482 - 6223440
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaa 72  Q
    |||||||||||||| | |||||||||||||||| |||||||||    
T  6223482 tttacctaacaattttacaaatgttactaaatttaatcagtaa 6223440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 31347430 - 31347378
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    |||| |||||||||| ||||||||||||||||| ||| ||||  |||||||||    
T  31347430 tttatctaacaattgatcaaatgttactaaatttaattagtagcatttttctt 31347378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 26608529 - 26608610
Alignment:
Q  1 tgcaactaaagcccttcggtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    |||||||||||| |||  |||||||||| |||| |||||||||||||||||||||||||||| ||||||||| |||||||||    
T  26608529 tgcaactaaagctctttagtaacatgggctttatctaacaattgttcaaatgttactaaatttaatcagtaacatttttctt 26608610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 9242492 - 9242606
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||||||  |||| ||||||||||||||| |||||| ||||| ||| ||||| | |||||||  |  |||||||||||| ||||||| ||||| ||||    
T  9242492 gtaacatggactttatctaacaattgttcaagtgttacaaaatttaattagtaacaattttcttgatttagttacaattttcaagtgttgctaaatgtca 9242591  T
Q  118 ttattgtagtagtga 132  Q
    |||||||||||||||    
T  9242592 ttattgtagtagtga 9242606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 26224997 - 26225099
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    ||||||||| |||||||||| |||||||||||| ||| ||||  |||||||||  |  |||||||||||| |||||||| |||| |||||||||||||||    
T  26224997 tttacctaataattgttcaagtgttactaaatttaattagtatcatttttcttgatttagttacaattttcaagtgttattaaatgtcattattgtagta 26225096  T
Q  129 gtg 131  Q
    |||    
T  26225097 gtg 26225099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 30089842 - 30089764
Alignment:
Q  4 aactaaagcccttcggtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    ||||||||| |||  |||||||||| ||| ||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  30089842 aactaaagctctttagtaacatgggcttttcctaacaattgttcaaatgttactaaatataatcagtaacatttttctt 30089764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 26621084 - 26621191
Alignment:
Q  4 aactaaagcccttcggtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aag 102  Q
    ||||||||| |||  |||||||||  |||| |||||||||||| ||||||| ||||||| ||||||||| |||||||||| |  ||| |||||||| |||    
T  26621084 aactaaagctctttagtaacatggcttttatctaacaattgtttaaatgttgctaaatttaatcagtaacatttttcttaatttagtaacaattttcaag 26621183  T
Q  103 tgttacta 110  Q
    ||||||||    
T  26621184 tgttacta 26621191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 4685422 - 4685524
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    |||||||||||||||||||| |||| ||||||| ||| | ||| |||||||||  |  |||||||||||| ||||||||||||  | |||||||||||||    
T  4685422 tttacctaacaattgttcaagtgttgctaaatttaattactaacatttttcttgatttagttacaattttcaagtgttactaattgccattattgtagta 4685521  T
Q  129 gtg 131  Q
    |||    
T  4685522 gtg 4685524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 26205434 - 26205536
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    |||||||| ||||| ||||| |||||||||||| ||| ||||| |||||||||  |  ||||| |||||| |||||| |||||| |||||||||||||||    
T  26205434 tttacctaccaatttttcaagtgttactaaatttaattagtaacatttttcttgatttagttataattttcaagtgtcactaaatgtcattattgtagta 26205533  T
Q  129 gtg 131  Q
    |||    
T  26205534 gtg 26205536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 26619112 - 26619202
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaattttaagtgttacta 110  Q
    ||||||| || |||||||| ||||||||||||||||| |||||| ||||||||| |||||||||  |  ||| ||||||| |||||||||||    
T  26619112 gtaacataggatttaccta-caattgttcaaatgttaataaatttaatcagtaacatttttcttgatttagtaacaatttcaagtgttacta 26619202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 10022205 - 10022103
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaa-aatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagt 127  Q
    |||||||||||||||||||  |||||||||| | ||| ||||| | ||||||| |||  |||||||||||| || |||||||||| ||||||||| |||     
T  10022205 tttacctaacaattgttcatgtgttactaaacttaattagtaacattttttctgatt-tagttacaattttcaattgttactaaatgtcattattttagc 10022107  T
Q  128 agtg 131  Q
    ||||    
T  10022106 agtg 10022103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 20277353 - 20277428
Alignment:
Q  4 aactaaagcccttcggtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaattttt 79  Q
    ||||||||| |||  |||||| | | ||||||||||||||||| ||||||||||||||| ||| | ||| ||||||    
T  20277353 aactaaagctctttagtaacaggtgctttacctaacaattgtttaaatgttactaaatttaattaataatattttt 20277428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 8241688 - 8241630
Alignment:
Q  20 taacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttt 78  Q
    ||||||||  |||| ||||||| ||||||||| ||| |||||||||||||||| |||||    
T  8241688 taacatggattttatctaacaactgttcaaatattattaaattcaatcagtaacatttt 8241630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 16086579 - 16086526
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaa 72  Q
    |||||||| | |||||||||||||| ||||||||||| |||||| ||| |||||    
T  16086579 gtaacatgagctttacctaacaattattcaaatgttattaaatttaattagtaa 16086526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 3374374 - 3374330
Alignment:
Q  38 acaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    |||||||||||||||||||| |||| ||||| ||| |||||||||    
T  3374374 acaattgttcaaatgttacttaatttaatcaataacatttttctt 3374330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 16734897 - 16734784
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||  |  |||||||||||| ||||||||||||  | ||    
T  16734897 gtaacacgggctttacctaacaattgttcaaatgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttactaattgcca 16734798  T
Q  118 ttattgtagtagtg 131  Q
    ||||||||||||||    
T  16734797 ttattgtagtagtg 16734784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 6684185 - 6684072
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||||||  ||||||||||||| |||| | |||||||||||| ||| ||||| |||||||||  |  |||||||||||| ||||||||||||| | ||    
T  6684185 gtaacatggactttacctaacaat-gttcgagtgttactaaatttaattagtaacatttttcttgattaagttacaatttttaagtgttactaaatgcca 6684087  T
Q  118 ttattgtagtagtga 132  Q
    |||||||||||||||    
T  6684086 ttattgtagtagtga 6684072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 11936775 - 11936888
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||| ||| |||| ||||||||||||||| |||| ||||||| ||| ||||| |||||||||  |  |||||||||||| ||||||||||||  | ||    
T  11936775 gtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttactaattgcca 11936874  T
Q  118 ttattgtagtagtg 131  Q
    ||||||||||||||    
T  11936875 ttattgtagtagtg 11936888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 15361796 - 15361694
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaa-ttttaagtgttactaaaggtcattattgtagta 128  Q
    |||||||||||||||||||| |||| ||||||| ||| ||||| |||||||||  |  |||||||| ||||||||||||||||    |||||||||||||    
T  15361796 tttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaatttttaagtgttactaattaccattattgtagta 15361697  T
Q  129 gtg 131  Q
    |||    
T  15361696 gtg 15361694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 12591925 - 12591820
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||| ||| |||||||||||||||||| |  ||||||||||| ||| | ||| |||||||||  |  |||||||||||| ||||||||||||| ||||    
T  12591925 gtaacacgggctttacctaacaattgttcgagcgttactaaatttaattactaacatttttcttgatttagttacaattttcaagtgttactaaatgtca 12591826  T
Q  118 ttattg 123  Q
    ||||||    
T  12591825 ttattg 12591820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 29667934 - 29667986
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| |||||||||    
T  29667934 tttacctaacaattgttcaaatgttactaaatttaattagtaacatttttctt 29667986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 14669365 - 14669467
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    |||||||||||||| ||| | |||| | ||||| ||| ||||| |||||||||  |  |||||||||||| ||||||| ||||| |||||||||||||||    
T  14669365 tttacctaacaattattcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttgctaaatgtcattattgtagta 14669464  T
Q  129 gtg 131  Q
    |||    
T  14669465 gtg 14669467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 17719742 - 17719844
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    |||| ||||||||||||| | |||| | ||| | ||| ||||| |||||||||  |  |||||||||||| ||||||| ||||| |||||||||||||||    
T  17719742 tttatctaacaattgttcgagtgttgcaaaaattaattagtaacatttttcttgatttagttacaattttcaagtgttgctaaatgtcattattgtagta 17719841  T
Q  129 gtg 131  Q
    |||    
T  17719842 gtg 17719844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 15690529 - 15690416
Alignment:
Q  20 taacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcat 118  Q
    ||||||||  |||| ||||||||||||  | ||| |||||||| ||| ||||| |||||||||  |  |||||||||||| || |||||||||| ||| |    
T  15690529 taacatggactttagctaacaattgtttgagtgtcactaaatttaattagtaacatttttcttgatttagttacaattttcaaatgttactaaatgtctt 15690430  T
Q  119 tattgtagtagtga 132  Q
    ||||||||| ||||    
T  15690429 tattgtagtggtga 15690416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 11948755 - 11948835
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt 99  Q
    |||||| ||| |||| ||||||||||||||| |||| ||||||| ||| ||||| |||||||||  |  ||||||||||||    
T  11948755 gtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaatttt 11948835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 23264515 - 23264567
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    |||||||||||||||||| |||||||||||||| ||| ||||| | |||||||    
T  23264515 tttacctaacaattgttcgaatgttactaaatttaattagtaacaattttctt 23264567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 23904371 - 23904403
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaatt 62  Q
    |||||||||||||||||||||||||||||||||    
T  23904371 tttacctaacaattgttcaaatgttactaaatt 23904403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 9631178 - 9631206
Alignment:
Q  34 cctaacaattgttcaaatgttactaaatt 62  Q
    |||||||||||||||||||||||||||||    
T  9631178 cctaacaattgttcaaatgttactaaatt 9631206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 7407762 - 7407875
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||| ||| |||||||||||||||||||| |||| ||||||| ||| ||||| |||||||||  |  |||||||||||| ||||||||||||  | ||    
T  7407762 gtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaatatttttcttgatttagttacaattttcaagtgttactaattgcca 7407861  T
Q  118 ttattgtagtagtg 131  Q
    ||||||||||||||    
T  7407862 ttattgtagtagtg 7407875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 13846084 - 13845976
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||| ||| |||||||||||||||||||| |||| ||||||| ||| ||||| |||||||||  |  |||||||||||| ||||||| ||||| ||||    
T  13846084 gtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttgctaaatgtca 13845985  T
Q  118 ttattgtag 126  Q
    |||||||||    
T  13845984 ttattgtag 13845976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 1627966 - 1628059
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattatt 122  Q
    ||||| |||||||||||||| |||||||||||| ||| ||||| |||||||||  |  |||||||||||| ||||||||||||| |||||||||    
T  1627966 tttacttaacaattgttcaagtgttactaaatttaattagtaatatttttcttgatttagttacaattttcaagtgttactaaatgtcattatt 1628059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 2550247 - 2550145
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    |||||||||||||||||||| |||| ||||||| ||| ||||| |||||||||  |  |||||||||||| ||||||||| ||  | |||||||||||||    
T  2550247 tttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaagtgttaccaattgccattattgtagta 2550148  T
Q  129 gtg 131  Q
    |||    
T  2550147 gtg 2550145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 26707940 - 26707888
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| |||||||||    
T  26707940 tttacctaacaattgttcaaatgttactaaatttaattagtaacatttttctt 26707888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 1654657 - 1654555
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtcattattgtagta 128  Q
    ||||| |||||||||||||| |||| ||||||| ||| ||||| |||||||||  |  |||||||||||| || |||||||||  | |||||||||||||    
T  1654657 tttacttaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaattttcaattgttactaattgccattattgtagta 1654558  T
Q  129 gtg 131  Q
    |||    
T  1654557 gtg 1654555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 16457350 - 16457419
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt 99  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||  |  ||||||||||||    
T  16457350 tttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttgatttagttacaatttt 16457419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 2943222 - 2943285
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    |||||| ||| || ||||||||||||||| |||||||||||||| ||| ||||| |||||||||    
T  2943222 gtaacacgggcttaacctaacaattgttcgaatgttactaaatttaattagtaacatttttctt 2943285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 5498570 - 5498507
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    ||||||| || ||||||||||||||||||| | ||||||||||| ||| ||||| |||||||||    
T  5498570 gtaacataggttttacctaacaattgttcagaagttactaaatttaattagtaacatttttctt 5498507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 26735726 - 26735683
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaatt 62  Q
    |||||||||  |||||||||||||||||||||||||||||||||    
T  26735726 gtaacatggattttacctaacaattgttcaaatgttactaaatt 26735683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 9633450 - 9633510
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaattttt 79  Q
    |||||| ||| ||||||||||||||||| |||||| |||||||| ||| ||||| ||||||    
T  9633450 gtaacaggggctttacctaacaattgtttaaatgtaactaaatttaattagtaacattttt 9633510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 36035396 - 36035318
Alignment:
Q  4 aactaaagcccttcggtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttctt 82  Q
    ||||||||| |||  |||||| | | |||||||||||||||| ||| |||||||||||| ||| ||||  |||||||||    
T  36035396 aactaaagctctttagtaacacgagctttacctaacaattgtacaattgttactaaatttaattagtattatttttctt 36035318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 6780 - 6678
Alignment:
Q  30 tttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaa-ttttaagtgttactaaaggtcattattgtagta 128  Q
    |||||||||||||||||||| |||| ||||||| ||| ||||| |||||||||  |  |||||||| ||||||||||||||||    |||||||||||||    
T  6780 tttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaatttttaagtgttactaattaccattattgtagta 6681  T
Q  129 gtg 131  Q
    |||    
T  6680 gtg 6678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 755 - 868
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||||||  |||| ||||||||||||| | |||| | ||||| ||| ||||| | |||||||  |  |||||||||||| ||||||| ||||| ||||    
T  755 gtaacatggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttcttgatttagttacaattttcaagtgttgctaaatgtca 854  T
Q  118 ttattgtagtagtg 131  Q
    ||||||||||||||    
T  855 ttattgtagtagtg 868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 40706 - 40819
Alignment:
Q  19 gtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaaaatttttcttattccagttacaatttt-aagtgttactaaaggtca 117  Q
    |||||||||  |||| ||||||||||||| | |||| | ||||| ||| ||||| | |||||||  |  |||||||||||| |||| || ||||| ||||    
T  40706 gtaacatggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttcttgatttagttacaattttcaagtattgctaaatgtca 40805  T
Q  118 ttattgtagtagtg 131  Q
    ||||||||||||||    
T  40806 ttattgtagtagtg 40819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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