View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4054_low_14 (Length: 209)

Name: NF4054_low_14
Description: NF4054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4054_low_14
NF4054_low_14
[»] chr8 (8 HSPs)
chr8 (1-209)||(1796843-1797051)
chr8 (1-209)||(6230849-6231076)
chr8 (1-196)||(5194168-5194382)
chr8 (112-196)||(5183868-5183951)
chr8 (4-94)||(5204561-5204651)
chr8 (1-94)||(5175408-5175501)
chr8 (1-66)||(5184010-5184075)
chr8 (1-53)||(5171218-5171270)
[»] chr7 (1 HSPs)
chr7 (1-209)||(5177770-5177995)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 1796843 - 1797051
Alignment:
Q  1 gcagggcagcaacttgaaagtaagatatttacaatagataaaaacaaagtttcattttctggaacatagcgaaggtacaaatgtttgatacttgaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1796843 gcagggcagcaacttgaaagtaagatatttacaatagataaaaacaaagtttcattttctggaacatagcgaaggtacaaatgtttgatacttgaaatag 1796942  T
Q  101 caccgggtgttgtacatcctatgtaatccagacacaaatacaataagaagttatgaagattgaaccaacgaattaagtagctaactaatactcaccacag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1796943 caccgggtgttgtacatcctatgtaatccagacacaaatacaataagaagttatgaagattgaaccaacgaattaagtagctaactaatactcaccacag 1797042  T
Q  201 atggtttac 209  Q
    |||||||||    
T  1797043 atggtttac 1797051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 6231076 - 6230849
Alignment:
Q  1 gcagggcagcaacttgaaagtaagatatttacaatagataaaaacaaagtttcattttctggaacatagcgaaggtacaaatgtttgat----------- 89  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| ||||||||| ||| ||||||||               
T  6231076 gcagggcagcaacttgaaagtaagatatttacaatagatgaaaaaaaagtttcattttttggaacagagcgaaggtgcaagtgtttgatgcttggtggag 6230977  T
Q  90 --------acttgaaatagcaccgggtgttgtacatcctatgtaatccagacacaaatacaataagaagttatgaagattgaaccaacgaattaagtagc 181  Q
            |||||||||| || ||||||| ||| ||||||  ||||||| ||||||||||||| || ||||||||||||||||| ||||| |||||||||    
T  6230976 gggatgacacttgaaataccatcgggtgtagtatatcctacataatccaaacacaaatacaatgagtagttatgaagattgaactaacgatttaagtagc 6230877  T
Q  182 taactaatactcaccacagatggtttac 209  Q
    ||| |||||||||||||| |||||||||    
T  6230876 taattaatactcaccacaaatggtttac 6230849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 5194382 - 5194168
Alignment:
Q  1 gcagggcagcaacttgaaagtaagatatttacaatagataaaaacaaagtttcattttctggaacatagcgaaggtacaaatgtttgatacttg------ 94  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||  |||||||||| |||||| ||| |||||||||||||          
T  5194382 gcagggcagcaacttgaaagtaagatatttacaatagatgaaaacgtagtttcatttgttggaacatagagaaggtgcaagtgtttgatacttggtggag 5194283  T
Q  95 -------------aaatagcaccgggtgttgtacatcctatgtaatccagacacaaatacaataagaagttatgaagattgaaccaacgaattaagtagc 181  Q
                 ||||| || ||||||| ||||||||||  |||||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||    
T  5194282 gggatgacacttgaaataccatcgggtgtagtacatcctacataatccagccacaaatataataagtagttatgaagattgagccaacgaattaagtagc 5194183  T
Q  182 taactaatactcacc 196  Q
    ||| |||||||||||    
T  5194182 taattaatactcacc 5194168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 5183951 - 5183868
Alignment:
Q  112 gtacatcctatgtaatccagacacaaatacaataagaagttatgaagattgaaccaacgaattaagtagctaactaatactcacc 196  Q
    ||||||||||  |||||||||||||||||||||||| || |||||||||||||  ||||||||||| ||||||||||||||||||    
T  5183951 gtacatcctacataatccagacacaaatacaataagtaggtatgaagattgaa-aaacgaattaagaagctaactaatactcacc 5183868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 5204651 - 5204561
Alignment:
Q  4 gggcagcaacttgaaagtaagatatttacaatagataaaaacaaagtttcattttctggaacatagcgaaggtacaaatgtttgatacttg 94  Q
    |||||||| |||||||||| ||||||||||| |||  |||||||| ||||||||| ||||||| ||||||||| ||| |||||||| ||||    
T  5204651 gggcagcagcttgaaagtatgatatttacaacagacgaaaacaaaatttcattttttggaacagagcgaaggtgcaagtgtttgatgcttg 5204561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 5175501 - 5175408
Alignment:
Q  1 gcagggcagcaacttgaaagtaagatatttacaatagataaaaacaaagtttcattttctggaacatagcgaaggtacaaatgtttgatacttg 94  Q
    ||||||| |||||||||||||||||||||||| || ||| |||||||||||||| ||| ||||||| |  |||||| ||| || ||||||||||    
T  5175501 gcagggcggcaacttgaaagtaagatatttacgatggatgaaaacaaagtttcagtttttggaacagactgaaggtgcaagtgattgatacttg 5175408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5184075 - 5184010
Alignment:
Q  1 gcagggcagcaacttgaaagtaagatatttacaatagataaaaacaaagtttcattttctggaaca 66  Q
    |||||||||||| ||||||||||| |||||| | ||||| |||||||||||||||| |||||||||    
T  5184075 gcagggcagcaaattgaaagtaaggtatttatagtagatgaaaacaaagtttcattatctggaaca 5184010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 5171270 - 5171218
Alignment:
Q  1 gcagggcagcaacttgaaagtaagatatttacaatagataaaaacaaagtttc 53  Q
    ||||||||||| ||||| |||||||||||||||  |||| |||||||||||||    
T  5171270 gcagggcagcagcttgagagtaagatatttacagcagatgaaaacaaagtttc 5171218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 5177995 - 5177770
Alignment:
Q  1 gcagggcagcaacttgaaagtaagatatttacaatagataaaaacaaagtttcattttctggaacatagcgaaggtacaaatgtttgatacttg------ 94  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| ||||||| ||   |||| ||| |||||||||||||          
T  5177995 gcagggcagcaacttgaaagtaagatatttacgatagatgaaaacaaagtttcactttgtggaacacagatgaggtgcaagtgtttgatacttggtggag 5177896  T
Q  95 -------------aaatagcaccgggtgttgtacatcctatgtaatccagacacaaatacaataagaagttatgaagattgaaccaacgaattaagtagc 181  Q
                 ||||| |||||| ||||||||||||||  |||||||||||||  ||||||||| ||||| ||||| ||||| |||||||||||||||    
T  5177895 gggatgacgcttgaaataccaccggctgttgtacatcctacataatccagacaca--tacaataagtagttacgaagaatgaactaacgaattaagtagc 5177798  T
Q  182 taactaatactcaccacagatggtttac 209  Q
    ||| ||||||||||| || |||||||||    
T  5177797 taattaatactcacctcaaatggtttac 5177770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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