View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4054_low_2 (Length: 434)
Name: NF4054_low_2
Description: NF4054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4054_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 12 - 426
Target Start/End: Original strand, 2214901 - 2215314
Alignment:
| Q |
12 |
caatatattcatggactgaatttttacaattggtgagttattcatttcatgtattattactcgttctactcttacttgaaaattggacatgaaagctgct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2214901 |
caatatattcatggactgaatttttacaattggtgagttattcatttcatgtattattactcgttctactcttacttgaaaattggacatgaaagctgct |
2215000 |
T |
|
| Q |
112 |
ccatgtataatcaattggcattgcctgcaattgctgagtcccctttgcagcataaatagttggttgagttgtatccctatcttggtccaccagcagttag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
2215001 |
ccatgtataatcaattggcattgcctgcaattgctgag-cccctttgcagcataaatagttggttgagttgtatcactatcttggtccaccggcagttag |
2215099 |
T |
|
| Q |
212 |
tctaagtaatagcggaatgtgtggaaagaaataagttaacataattgttagttgttacgcaattcaagtaagaaaaataaggatgatatcaggtcaatgg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215100 |
tctaagtaatagcggaatgtgtggaaagaaataagttaacataattgttagttgttacgcaattcaagtaagaaaaataaggatgatatcaggtcaatgg |
2215199 |
T |
|
| Q |
312 |
aaactaatgtattgtttgaatagttgacttgggtcaatttttgtagatacatatgcattagaagttatttttctaaacctcattacaagtatggctagca |
411 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215200 |
aaactaatgcattgtttgaatagttgacttgggtcaatttttgtagatacatatgcattagaagttatttttctaaacctcattacaagtatggctagca |
2215299 |
T |
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| Q |
412 |
gaaattaatgtctct |
426 |
Q |
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||||||||||||||| |
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| T |
2215300 |
gaaattaatgtctct |
2215314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 426
Target Start/End: Original strand, 2202306 - 2202717
Alignment:
| Q |
12 |
caatatattcatggactgaatttttacaattggtgagttattcatttcatgtattat--tactcgttctactcttacttgaaaattggacatgaaagctg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
2202306 |
caatatattcatggactgaatttttacaattggtgagttattcatttcatgtgttatattactctttctactcttacttgtaaattggacatgaaagctg |
2202405 |
T |
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| Q |
110 |
ctccatgtataatcaattggcattgcctgcaattgct--gagtcccctttgcagcataaatagttggttgagttgtatccctatcttggtccaccagcag |
207 |
Q |
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|||| |||||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| |||||| ||||| | |||| |
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| T |
2202406 |
ctccttgtataattaattggcattgcctgcaatttctctgagtcccctatgcagcataaatagttggttgagttgtatcactatctcggtcctctggcag |
2202505 |
T |
|
| Q |
208 |
ttagtctaagtaatagcggaatgtgtggaaagaaataagttaacataattgttagttgttacgcaattcaagtaagaaaaataaggatgatatcaggtca |
307 |
Q |
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|||| ||||||| ||| |||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2202506 |
ttagcctaagtactagtggaatgtgtggaaagaaataagttaaca-------tacttgttatgcaattcaagtaagaaaaataaggatgatatcaggtca |
2202598 |
T |
|
| Q |
308 |
atggaaactaatgtattgtttgaatagttgacttgggtcaatttttgtagatacatatgcattagaagttatttttctaaacctcattacaagtatggct |
407 |
Q |
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||||||||| ||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2202599 |
atggaaacttatgcattgattggttagttgacttgggtcaatttttatagatacatatgcattaaaagttatttttctaaacctcattacaagtatggct |
2202698 |
T |
|
| Q |
408 |
agcagaaattaatgtctct |
426 |
Q |
| |
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|||||||||||||||||| |
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| T |
2202699 |
tgcagaaattaatgtctct |
2202717 |
T |
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