View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4054_low_7 (Length: 289)
Name: NF4054_low_7
Description: NF4054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4054_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 11982364 - 11982070
Alignment:
| Q |
1 |
cttcctttaaaattttattatgaggactccccaccttaaaccaatgatcatttccttagacatacttaactatcaattgataagctataaccctctctgt |
100 |
Q |
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| T |
11982364 |
cttcctttaaaattttattatgaggactccccaccttaaaccaatgatcatttccttagacatacttaactatcaattgataagctataaccctctctgt |
11982265 |
T |
|
| Q |
101 |
tcaaaagagaatgtagttcctagttcaggggttgttccttctgaattggctctcttaagt---------------------tgctcccaatgttctgcta |
179 |
Q |
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| T |
11982264 |
tcaaaagagaatgtagttcctagttcaggggttgttccttctgaattggctctcttaagttgctacaattctctcttaagttgctcccaatgttctgcta |
11982165 |
T |
|
| Q |
180 |
caaatttttctttaacccctaaaacaacgtgtgtttaatctaagggttcacttgcatgtgaattttcttggtgattatgtcaataatgttgaaag |
274 |
Q |
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| T |
11982164 |
caaatttttctttgacccctaaaacaacgtgtgtttaatctaagggttcacttgcatgtggattttcttggtgattatgtcaataatgttgaaag |
11982070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 25006069 - 25005975
Alignment:
| Q |
69 |
actatcaattgataagctataaccctctctgttcaaaagagaatgtagttcctagt----tcaggggttgttccttctgaattggctctcttaag |
159 |
Q |
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| T |
25006069 |
actattaattgataagctataatcctctttgtttaaaagagaatgtagttcttagtctagctaggggttgttccttctgaattggctctcttaag |
25005975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 31909342 - 31909418
Alignment:
| Q |
196 |
ccctaaaacaacgtgtgtttaatctaagggttcacttgcatgtgaattttcttggtgattatgtcaataatgttgaaag |
274 |
Q |
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||||||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||| | |||||||||||||| |
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| T |
31909342 |
ccctaaaacaa--tgtgtttaatataacggttcacttgcatgtggattttcttggtgattacatgaataatgttgaaag |
31909418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 147
Target Start/End: Original strand, 31908296 - 31908438
Alignment:
| Q |
2 |
ttcctttaaaattttattatgaggactccccaccttaaac-caatgatcatttccttagacatacttaactatcaattgataagctataaccctctctgt |
100 |
Q |
| |
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||||| ||||||| ||| |||||| |||||| | ||||| |||||||| ||| |||| |||| || ||| ||||||||| |||| ||| |||| ||| |
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| T |
31908296 |
ttcctctaaaattctatgatgagg-ctcccctctttaaatacaatgatctttttcttaaacat-ctaaacgatcaattga--agctctaatcctccttgt |
31908391 |
T |
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| Q |
101 |
tcaaaagagaatgtagttcctagttcaggggttgttccttctgaatt |
147 |
Q |
| |
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||| ||||||||||||||||||||||||| |||||| ||| |||||| |
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| T |
31908392 |
tcacaagagaatgtagttcctagttcaggagttgtttcttatgaatt |
31908438 |
T |
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