View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4055_high_1 (Length: 540)
Name: NF4055_high_1
Description: NF4055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4055_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 11 - 513
Target Start/End: Complemental strand, 39109052 - 39108551
Alignment:
| Q |
11 |
cagagaaacacttgaagtagctctgatctggagcagaggaatccgatgaagaaagtaacttcacaccttctcttgaaagctgttgagaagaaccatcaga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39109052 |
cagagaaacacttgaagtagctctgatctggagcagaggaatccgatgaagaaagtaacttcacaccttctcttgaaagctgttgagaagaaccatcaga |
39108953 |
T |
|
| Q |
111 |
agaagaagaaacagagccagaatcatcattagccattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctcaaatagagc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39108952 |
agaagaagaaacagagccagaatcatcattagccattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctcaaatagagc |
39108853 |
T |
|
| Q |
211 |
aaagatcttgctttcatctctagggcttgatctgaacttggagaaatagctaaagctgagtctagaagacttatagctgaaacaatctcgtttcgttctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39108852 |
aaagatcttgctttcatctctagggcttgatctgaacttggagaaatagctaaagctgagtctagaagacttatagctgaaacaatctcgtttcgttctt |
39108753 |
T |
|
| Q |
311 |
gtgttgcaatgagtgttcttgcatctttgatatatttctcaacaatctatnnnnnnnnnnnnnnnnnntattcagacatgttttgagaatgaaaaaacaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39108752 |
gtgttgcaatgagtgttcttgcatctttgatatatttctcaacaatctat-aaaacaaaaacaaaaaatattcagacatgttttgagaatgaaaaaacaa |
39108654 |
T |
|
| Q |
411 |
aacaagaatttaaggtgaaatatttagaggtttactttacggtttgtgagccaccagtgttgttttttctctgttgaattgagaaaggaagttgtgacag |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39108653 |
aacaagaatttaaggtgaaatatttagaggtttaccttacggtttgtgagccaccagtgttgttttttctctgttgaattcagaaaggaagttgtgacag |
39108554 |
T |
|
| Q |
511 |
cca |
513 |
Q |
| |
|
||| |
|
|
| T |
39108553 |
cca |
39108551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 358
Target Start/End: Original strand, 44707989 - 44708239
Alignment:
| Q |
108 |
agaagaagaagaaacagagccagaatcatcattagccattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctcaaatag |
207 |
Q |
| |
|
||||||||||||| ||||| || ||| ||||||| |||| ||||||| ||||| || ||||||||||||| || || |||||||||||||| | || |
|
|
| T |
44707989 |
agaagaagaagaaccagaggaaggatcttcattagtcattctcaaactcggaatgtagtcttgaagcatatcagcaacatctttgaatcttcttaggtaa |
44708088 |
T |
|
| Q |
208 |
agcaaagatcttgctttcatctctagggcttgatctgaacttggagaaatagctaaagctgagtctagaagacttatagctgaaacaatctcgtttcgtt |
307 |
Q |
| |
|
||||| || || ||| | | ||| || |||||||| ||| || || ||||||||||||| ||| |||||| | | |||||||| |||||| | ||| |
|
|
| T |
44708089 |
agcaatgacctagctcttagctcaagagcttgatccaaacgcggtgatatagctaaagctgcgtcgagaagattcaaagctgaaaggatctcgctctgtt |
44708188 |
T |
|
| Q |
308 |
cttgtgttgcaatgagtgttcttgcatctttgatatatttctcaacaatct |
358 |
Q |
| |
|
|||||||||| || | ||| ||| ||||| || |||||||| ||||||| |
|
|
| T |
44708189 |
cttgtgttgctattaagcttcgtgcgtcttttatgtatttctccacaatct |
44708239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 47057730 - 47057663
Alignment:
| Q |
135 |
atcattagccattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctca |
202 |
Q |
| |
|
|||||| |||||||||||| | |||||||| ||||||||||||| ||| || || ||||| ||||||| |
|
|
| T |
47057730 |
atcatttgccattttcaaattaggaatatagtcttgaagcatatctgcaacatccttgaaccttctca |
47057663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 13720336 - 13720402
Alignment:
| Q |
147 |
tttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctcaaatagagcaaa |
213 |
Q |
| |
|
||||| || ||| |||| ||| ||||||||||||| ||| |||| ||| |||||||||||||||||| |
|
|
| T |
13720336 |
tttcatacatggtatatcatcctgaagcatatttgttacatcttcgaaccttctcaaatagagcaaa |
13720402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University