View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4055_high_12 (Length: 251)
Name: NF4055_high_12
Description: NF4055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4055_high_12 |
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| [»] scaffold0781 (1 HSPs) |
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Alignment Details
Target: scaffold0781 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 5246 - 5031
Alignment:
| Q |
17 |
aattttcagttcatcataaagcttggaataatgnnnnnnncaataggcttggaatggtgtatgattttataatacttgaaaacgattaaagtatttttaa |
116 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5246 |
aattttcagttcatcataaagcttggaataatgcttttttcaataggcttggaatggtgtatgattttataatacttgaaaacgattaaagtatttttaa |
5147 |
T |
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| Q |
117 |
tatagtaaaatgggagatataattaaaaatttaaatgtgattttttggttctcgcattagctaaaatgggacaaagtatgaaatattagagaaatgtctt |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |
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| T |
5146 |
tatagtaaaatgggagatctaattaaaaatttaaatgtgattttttggttctcgcattagctaaaa-gggacaaagtatgaaatattagagaaacgactt |
5048 |
T |
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| Q |
217 |
ataaacatgttttcata |
233 |
Q |
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||||||||||||||||| |
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| T |
5047 |
ataaacatgttttcata |
5031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 2216789 - 2216574
Alignment:
| Q |
17 |
aattttcagttcatcataaagcttggaataatgnnnnnnncaataggcttggaatggtgtatgattttataatacttgaaaacgattaaagtatttttaa |
116 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2216789 |
aattttcagttcatcataaagcttggaataatgcttttttcaataggcttggaatggtgtatgattttataatacttgaaaacgattaaagtatttttaa |
2216690 |
T |
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| Q |
117 |
tatagtaaaatgggagatataattaaaaatttaaatgtgattttttggttctcgcattagctaaaatgggacaaagtatgaaatattagagaaatgtctt |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |
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| T |
2216689 |
tatagtaaaatgggagatctaattaaaaatttaaatgtgattttttggttctcgcattagctaaaa-gggacaaagtatgaaatattagagaaacgactt |
2216591 |
T |
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| Q |
217 |
ataaacatgttttcata |
233 |
Q |
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||||||||||||||||| |
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| T |
2216590 |
ataaacatgttttcata |
2216574 |
T |
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