View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4055_high_4 (Length: 450)
Name: NF4055_high_4
Description: NF4055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4055_high_4 |
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| [»] scaffold0781 (4 HSPs) |
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Alignment Details
Target: scaffold0781 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 5050 - 4909
Alignment:
| Q |
5 |
cttataaacatgttttcataatgttcggatgcacaatttgttaatgctaatacataatttcttcacttcataatatggtagtagatcctcctt--nnnnn |
102 |
Q |
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| T |
5050 |
cttataaacatgttttcataatgttcggatgcacaatttgttaatgctaatgcataatttcttcacttcataatatggtagtagatcctccttaaaaaaa |
4951 |
T |
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| Q |
103 |
nnntatggtagtagattttccctcgtgggaaagtttgttacg |
144 |
Q |
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| T |
4950 |
aaatatggtagtagattttccctcgtgggaaagtttgttacg |
4909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 332 - 441
Target Start/End: Complemental strand, 4725 - 4615
Alignment:
| Q |
332 |
actactacttctttgatttattcatcaa-taattcgtccgtttcatcatgtcttttgtgcttcctgtttcttaattcttcttcctatattcatttattgt |
430 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4725 |
actactacttctttgatttattcatcaaataattcgtccttttcatcatgtcttttgtgcttcctgtttcttaattcttcgtcctatattcatttattgt |
4626 |
T |
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| Q |
431 |
tcaagaataat |
441 |
Q |
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||||||||||| |
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| T |
4625 |
tcaagaataat |
4615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 186 - 269
Target Start/End: Complemental strand, 4867 - 4784
Alignment:
| Q |
186 |
gatgaagtttctgcgtagttcttcatcttatttgttcgatcttcattctctattcgcaatcatccattgattttgcgattcatc |
269 |
Q |
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| T |
4867 |
gatgaagtttctacgtagttcttcatcttatttgttcgatcttcattctctattcgcaatcatccattgattttgtgattcatc |
4784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 441
Target Start/End: Complemental strand, 6268 - 6203
Alignment:
| Q |
377 |
catgtcttttgtgcttcctgtttcttaattcttc-ttcctatattcatttattgttcaagaataat |
441 |
Q |
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| T |
6268 |
catgtcttttgtgcttcttgtttcttaattcttcgtccctatctttgttgattgttcaagaataat |
6203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 2216593 - 2216452
Alignment:
| Q |
5 |
cttataaacatgttttcataatgttcggatgcacaatttgttaatgctaatacataatttcttcacttcataatatggtagtagatcctcctt--nnnnn |
102 |
Q |
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| T |
2216593 |
cttataaacatgttttcataatgttcggatgcacaatttgttaatgctaatgcataatttcttcacttcataatatggtagtagatcctccttaaaaaaa |
2216494 |
T |
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| Q |
103 |
nnntatggtagtagattttccctcgtgggaaagtttgttacg |
144 |
Q |
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| T |
2216493 |
aaatatggtagtagattttccctcgtgggaaagtttgttacg |
2216452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 332 - 441
Target Start/End: Complemental strand, 2216268 - 2216158
Alignment:
| Q |
332 |
actactacttctttgatttattcatcaa-taattcgtccgtttcatcatgtcttttgtgcttcctgtttcttaattcttcttcctatattcatttattgt |
430 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2216268 |
actactacttctttgatttattcatcaaataattcgtccttttcatcatgtcttttgtgcttcctgtttcttaattcttcgtcctatattcatttattgt |
2216169 |
T |
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| Q |
431 |
tcaagaataat |
441 |
Q |
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||||||||||| |
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| T |
2216168 |
tcaagaataat |
2216158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 186 - 269
Target Start/End: Complemental strand, 2216410 - 2216327
Alignment:
| Q |
186 |
gatgaagtttctgcgtagttcttcatcttatttgttcgatcttcattctctattcgcaatcatccattgattttgcgattcatc |
269 |
Q |
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| T |
2216410 |
gatgaagtttctacgtagttcttcatcttatttgttcgatcttcattctctattcgcaatcatccattgattttgtgattcatc |
2216327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 332 - 441
Target Start/End: Complemental strand, 2217854 - 2217747
Alignment:
| Q |
332 |
actactacttctttgatttattcatcaataattcgtccgtttcatcatgtcttttgtgcttcctgtttcttaattcttcttcctatattcatttattgtt |
431 |
Q |
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| T |
2217854 |
actactatttttttgattgattcatcaat--ttcgtccatttcatcatgtcttttgtgcttcttgtttcttaattcttcgtcctatctttgttgattgtt |
2217757 |
T |
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| Q |
432 |
caagaataat |
441 |
Q |
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| T |
2217756 |
caagaataat |
2217747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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