View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4055_low_11 (Length: 292)

Name: NF4055_low_11
Description: NF4055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4055_low_11
NF4055_low_11
[»] chr1 (33 HSPs)
chr1 (27-255)||(37189565-37189792)
chr1 (27-155)||(10824586-10824714)
chr1 (27-155)||(18844461-18844589)
chr1 (27-155)||(22683143-22683271)
chr1 (40-155)||(37189370-37189484)
chr1 (41-155)||(15825752-15825864)
chr1 (27-155)||(19056152-19056280)
chr1 (40-155)||(18844678-18844794)
chr1 (27-155)||(19056368-19056496)
chr1 (29-145)||(10824380-10824496)
chr1 (159-273)||(38859908-38860022)
chr1 (159-219)||(48392417-48392477)
chr1 (27-114)||(22683358-22683445)
chr1 (159-273)||(10155973-10156087)
chr1 (159-219)||(3346843-3346903)
chr1 (159-219)||(30745401-30745461)
chr1 (159-219)||(30766852-30766912)
chr1 (40-91)||(22683290-22683341)
chr1 (159-217)||(23908342-23908400)
chr1 (159-216)||(42456629-42456686)
chr1 (159-273)||(47022759-47022873)
chr1 (159-219)||(7742790-7742850)
chr1 (159-219)||(49902525-49902585)
chr1 (159-217)||(13131953-13132011)
chr1 (159-217)||(29149561-29149619)
chr1 (159-217)||(44462491-44462549)
chr1 (159-219)||(5558366-5558425)
chr1 (159-219)||(10907659-10907719)
chr1 (180-273)||(42517251-42517344)
chr1 (159-218)||(5975045-5975104)
chr1 (40-91)||(10824516-10824567)
chr1 (40-91)||(19056297-19056348)
chr1 (159-219)||(26835395-26835455)
[»] chr8 (27 HSPs)
chr8 (27-155)||(13884491-13884619)
chr8 (28-155)||(13884706-13884833)
chr8 (27-161)||(42126378-42126512)
chr8 (27-155)||(29714544-29714672)
chr8 (27-161)||(11867899-11868032)
chr8 (27-148)||(2554067-2554188)
chr8 (45-147)||(29714777-29714879)
chr8 (27-155)||(42126601-42126729)
chr8 (159-273)||(42072485-42072599)
chr8 (159-219)||(16591386-16591446)
chr8 (159-219)||(21525415-21525475)
chr8 (159-219)||(35806851-35806911)
chr8 (166-218)||(16523170-16523222)
chr8 (29-111)||(14996678-14996761)
chr8 (159-217)||(22324653-22324711)
chr8 (166-219)||(26021460-26021513)
chr8 (40-88)||(2554002-2554050)
chr8 (159-219)||(24065330-24065390)
chr8 (159-219)||(33934380-33934440)
chr8 (159-219)||(42013929-42013989)
chr8 (40-91)||(14996608-14996659)
chr8 (60-155)||(43416265-43416360)
chr8 (166-219)||(16818984-16819037)
chr8 (159-219)||(19334840-19334900)
chr8 (40-91)||(29714691-29714742)
chr8 (63-139)||(26745991-26746067)
chr8 (166-218)||(43282863-43282915)
[»] chr3 (34 HSPs)
chr3 (27-158)||(46003465-46003596)
chr3 (27-155)||(40244627-40244756)
chr3 (27-155)||(51663467-51663595)
chr3 (27-155)||(51663252-51663380)
chr3 (27-153)||(20537930-20538056)
chr3 (46-154)||(40364194-40364301)
chr3 (27-155)||(20538151-20538279)
chr3 (27-154)||(46003251-46003378)
chr3 (27-155)||(40364043-40364171)
chr3 (159-218)||(3178760-3178819)
chr3 (159-218)||(13856156-13856215)
chr3 (159-219)||(10839391-10839451)
chr3 (95-155)||(40244873-40244933)
chr3 (159-218)||(5391514-5391573)
chr3 (159-217)||(19649385-19649443)
chr3 (158-219)||(6280370-6280431)
chr3 (159-219)||(8950515-8950575)
chr3 (159-219)||(21853254-21853314)
chr3 (166-217)||(20382583-20382634)
chr3 (40-91)||(46003395-46003446)
chr3 (159-219)||(1781819-1781879)
chr3 (159-219)||(36539689-36539749)
chr3 (159-219)||(40845928-40845988)
chr3 (159-219)||(54546961-54547021)
chr3 (159-217)||(19644340-19644398)
chr3 (159-217)||(23467507-23467565)
chr3 (159-273)||(44994925-44995040)
chr3 (166-219)||(27642724-27642777)
chr3 (159-219)||(32352904-32352964)
chr3 (159-219)||(39352251-39352310)
chr3 (159-219)||(43347347-43347407)
chr3 (45-91)||(20538076-20538122)
chr3 (158-219)||(33103799-33103860)
chr3 (159-199)||(47889783-47889823)
[»] scaffold0060 (1 HSPs)
scaffold0060 (27-155)||(22922-23050)
[»] chr2 (30 HSPs)
chr2 (27-155)||(16973066-16973194)
chr2 (27-155)||(44594455-44594583)
chr2 (1-155)||(2916380-2916534)
chr2 (27-154)||(38982774-38982901)
chr2 (27-155)||(16973281-16973409)
chr2 (27-155)||(40987659-40987787)
chr2 (40-155)||(44594250-44594366)
chr2 (40-155)||(38982559-38982674)
chr2 (40-155)||(11533674-11533790)
chr2 (27-154)||(2916594-2916721)
chr2 (27-132)||(24126146-24126245)
chr2 (27-155)||(13559519-13559646)
chr2 (159-218)||(6318470-6318529)
chr2 (27-132)||(24125876-24125975)
chr2 (159-219)||(29846499-29846559)
chr2 (63-151)||(40987899-40987987)
chr2 (90-155)||(24125672-24125737)
chr2 (159-273)||(42769715-42769829)
chr2 (159-219)||(14942055-14942115)
chr2 (159-219)||(40277299-40277359)
chr2 (159-219)||(41674717-41674777)
chr2 (40-91)||(16973213-16973264)
chr2 (159-218)||(33009730-33009789)
chr2 (159-217)||(2888098-2888156)
chr2 (159-217)||(14186451-14186509)
chr2 (159-273)||(3956629-3956743)
chr2 (159-219)||(19181605-19181665)
chr2 (40-91)||(38982704-38982755)
chr2 (40-91)||(44594385-44594436)
chr2 (159-219)||(14539715-14539775)
[»] chr4 (34 HSPs)
chr4 (27-161)||(39161284-39161418)
chr4 (40-155)||(50509358-50509473)
chr4 (27-160)||(55173470-55173603)
chr4 (41-155)||(47096802-47096914)
chr4 (27-155)||(39161504-39161632)
chr4 (45-154)||(37996068-37996177)
chr4 (40-155)||(55173336-55173452)
chr4 (27-155)||(47097017-47097142)
chr4 (161-219)||(11054515-11054573)
chr4 (159-273)||(17888507-17888621)
chr4 (159-273)||(31377447-31377560)
chr4 (159-217)||(52632575-52632633)
chr4 (159-273)||(16338170-16338284)
chr4 (159-219)||(1535828-1535888)
chr4 (159-219)||(49284414-49284474)
chr4 (108-155)||(2623449-2623496)
chr4 (160-217)||(12792244-12792301)
chr4 (166-219)||(37801275-37801328)
chr4 (166-219)||(47084076-47084129)
chr4 (159-219)||(20818624-20818684)
chr4 (159-219)||(34241050-34241110)
chr4 (159-219)||(36012196-36012256)
chr4 (159-219)||(50328853-50328913)
chr4 (166-217)||(10094406-10094457)
chr4 (159-219)||(25954807-25954867)
chr4 (159-218)||(9742545-9742604)
chr4 (40-91)||(39161436-39161487)
chr4 (159-217)||(35322717-35322775)
chr4 (159-217)||(46583554-46583612)
chr4 (159-195)||(322584-322620)
chr4 (63-139)||(9738136-9738212)
chr4 (167-219)||(19124749-19124801)
chr4 (159-219)||(46474051-46474111)
chr4 (40-91)||(47096947-47096999)
[»] chr5 (23 HSPs)
chr5 (27-155)||(21249364-21249492)
chr5 (159-273)||(8456920-8457034)
chr5 (159-218)||(10081202-10081261)
chr5 (159-218)||(9737993-9738054)
chr5 (159-217)||(11856352-11856410)
chr5 (159-217)||(42119679-42119737)
chr5 (159-273)||(38397655-38397769)
chr5 (159-219)||(23218542-23218602)
chr5 (159-218)||(16618582-16618641)
chr5 (159-218)||(25560339-25560398)
chr5 (160-219)||(29491425-29491483)
chr5 (159-218)||(33271282-33271341)
chr5 (106-156)||(21249629-21249679)
chr5 (159-273)||(6257367-6257481)
chr5 (159-219)||(37169044-37169104)
chr5 (159-219)||(39862498-39862558)
chr5 (159-218)||(29790231-29790290)
chr5 (41-91)||(21249511-21249561)
chr5 (159-219)||(614403-614463)
chr5 (159-218)||(15631670-15631730)
chr5 (159-219)||(36769085-36769145)
chr5 (167-216)||(15475408-15475457)
chr5 (167-219)||(27916205-27916257)
[»] chr7 (29 HSPs)
chr7 (27-154)||(28715645-28715772)
chr7 (27-155)||(41985912-41986040)
chr7 (45-160)||(30862215-30862330)
chr7 (27-161)||(28715859-28715993)
chr7 (27-155)||(6474282-6474411)
chr7 (27-161)||(6474498-6474631)
chr7 (27-140)||(47373679-47373792)
chr7 (27-154)||(30862437-30862564)
chr7 (1-155)||(47373464-47373620)
chr7 (85-155)||(41986183-41986253)
chr7 (104-161)||(22226666-22226723)
chr7 (159-219)||(19334571-19334631)
chr7 (159-219)||(29981124-29981184)
chr7 (159-273)||(44164700-44164814)
chr7 (159-219)||(10576730-10576790)
chr7 (159-219)||(32876541-32876601)
chr7 (159-219)||(34259575-34259635)
chr7 (159-219)||(34707173-34707233)
chr7 (159-218)||(29555951-29556010)
chr7 (159-218)||(33057669-33057728)
chr7 (159-219)||(29238154-29238214)
chr7 (31-139)||(6271188-6271296)
chr7 (159-219)||(9770716-9770776)
chr7 (159-219)||(15017830-15017890)
chr7 (159-219)||(17303125-17303185)
chr7 (159-219)||(24320450-24320510)
chr7 (63-139)||(38408153-38408229)
chr7 (41-91)||(41986058-41986108)
chr7 (159-219)||(10334235-10334295)
[»] chr6 (22 HSPs)
chr6 (31-162)||(24798843-24798974)
chr6 (45-155)||(2216813-2216923)
chr6 (27-155)||(18494736-18494862)
chr6 (27-152)||(11643754-11643879)
chr6 (27-140)||(24798642-24798755)
chr6 (40-161)||(11643979-11644099)
chr6 (63-155)||(24690357-24690449)
chr6 (27-155)||(18494949-18495077)
chr6 (75-158)||(24690611-24690694)
chr6 (159-219)||(9231865-9231925)
chr6 (159-219)||(14309809-14309869)
chr6 (167-219)||(1727944-1727996)
chr6 (167-219)||(13627605-13627657)
chr6 (159-219)||(24694662-24694722)
chr6 (159-215)||(27863756-27863812)
chr6 (40-91)||(11643898-11643949)
chr6 (39-92)||(24798769-24798822)
chr6 (159-219)||(13103129-13103189)
chr6 (159-219)||(28750661-28750721)
chr6 (84-139)||(9955643-9955698)
chr6 (41-139)||(9954825-9954923)
chr6 (159-219)||(24497585-24497645)
[»] scaffold0781 (1 HSPs)
scaffold0781 (45-155)||(5270-5380)
[»] scaffold0086 (1 HSPs)
scaffold0086 (159-219)||(20842-20902)
[»] scaffold0079 (1 HSPs)
scaffold0079 (159-273)||(54576-54690)
[»] scaffold0045 (1 HSPs)
scaffold0045 (163-219)||(34463-34519)
[»] scaffold0034 (1 HSPs)
scaffold0034 (41-97)||(108055-108111)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 27 - 255
Target Start/End: Original strand, 37189565 - 37189792
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37189565 agagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagataggggaccaaattgagacaatcaat 37189664  T
Q  127 taagttaagggaccaggtgattgaataagtctaaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcnnnnnnn 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  37189665 taagttaagggaccaggtgattgaataagtctaaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc-aaaaat 37189763  T
Q  227 ttgggccggagtccaagcgaatgcctggg 255  Q
    ||||||||||||||  |||||||||||||    
T  37189764 ttgggccggagtccgggcgaatgcctggg 37189792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 10824586 - 10824714
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| || |||||||||||||||||||||||    
T  10824586 agagaaactactagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaat 10824685  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    |||||||||||||| | ||||||||||||    
T  10824686 taagttaagggaccggatgattgaataag 10824714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 18844589 - 18844461
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||| |||||||||||| |||||||||||| || ||||||||||||||| |||||||    
T  18844589 agagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggggaccaaattgagataatcaat 18844490  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    ||||||||||||||| ||| |||||||||    
T  18844489 taagttaagggaccatgtggttgaataag 18844461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 22683271 - 22683143
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | ||||||||||||||||||| | |||||||||||| |||||||||||| |||||||||||| || |||||||||||||||||||||||    
T  22683271 agagaaactaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaat 22683172  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    |||||||| ||| | ||||||||||||||    
T  22683171 taagttaaaggagcgggtgattgaataag 22683143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 37189484 - 37189370
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggac 139  Q
    ||||||||||||||||||| || |||||||||||  |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||    
T  37189484 gaaaggactaaaactagtaacggagcaaaacatagaggaccaaattggtacaaattatagttatgagaccaaattgagacaatcaattaagttaa-ggac 37189386  T
Q  140 caggtgattgaataag 155  Q
    | ||||||||||||||    
T  37189385 cgggtgattgaataag 37189370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 15825752 - 15825864
Alignment:
Q  41 aaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggacc 140  Q
    ||||||||||||||| || | |||||||||||| ||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||| ||||    
T  15825752 aaaggactaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagtta--ggaccaaattgagacaatcaattaagttaagagacc 15825849  T
Q  141 aggtgattgaataag 155  Q
     ||||||||||||||    
T  15825850 gggtgattgaataag 15825864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 19056280 - 19056152
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | |||| |||||||||||||| | |||||||| ||| |||||||||||| |||||||||||  || ||||||||||| | |||||||||    
T  19056280 agagaaactaacagaaaagactaaaactagtaacaaagcaaaatataggggaccaaattgatacaaattataattaggggaccaaattaatacaatcaat 19056181  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    |||||||||||| ||||||||||||||||    
T  19056180 taagttaagggatcaggtgattgaataag 19056152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 18844678 - 18844794
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatggg-accaaattgagacaatcaattaagttaaggga 138  Q
    ||||| ||||||||||||| || |||||||||||  ||||||||||| |||||||||||| || ||  ||||||||||||||||||||||||||||||||    
T  18844678 gaaagaactaaaactagtaacggagcaaaacatagaggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaaggga 18844777  T
Q  139 ccaggtgattgaataag 155  Q
     | ||||||||||||||    
T  18844778 tcgggtgattgaataag 18844794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 19056368 - 19056496
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||  | |||| |||||||||||||| | |||||||||||| |  |||||||||||||| ||||||| || ||||||||||| | |||||||||    
T  19056368 agagaaactgacagaaatgactaaaactagtaacaaagcaaaacataggataccaaattggtacagattatagttaggggaccaaattaaaacaatcaat 19056467  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    |||||||||||||| | ||||||||||||    
T  19056468 taagttaagggaccggatgattgaataag 19056496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 10824496 - 10824380
Alignment:
Q  29 agaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaatta 128  Q
    |||||||| | ||||||||||||||||||| || |||||||||||  ||||||||||| |||||||||||  || ||||||||||||  | |||||||||    
T  10824496 agaaactaacagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattgatacaaattataattaggggaccaaattgcaataatcaatta 10824397  T
Q  129 agttaagggaccaggtg 145  Q
    |||||| ||||| ||||    
T  10824396 agttaaaggaccgggtg 10824380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 38859908 - 38860022
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 258  Q
    |||||| ||||||||||| | ||||||||||||||||||||  |||||||||||||||||        ||||||||||| ||  |||| |||| ||||||    
T  38859908 aaattgcccaatttataggggtttatataagaaattcataggaatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtc 38860007  T
Q  259 gcctggccatagaac 273  Q
    ||| |||||||||||    
T  38860008 gccgggccatagaac 38860022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 48392477 - 48392417
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||||| ||||||||||    
T  48392477 aaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaattgc 48392417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 22683358 - 22683445
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaatt 114  Q
    ||||||||||   ||||||||||||||||||| || |||||||||||  ||||||||||||||||||| | || || |||||||||||    
T  22683358 agagaaactaagagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattggtacaaataaaagttaggggaccaaatt 22683445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 10156087 - 10155973
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 258  Q
    |||||||||||||||||||  ||||||||||||||||||||  ||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||    
T  10156087 aaattgtccaatttatagaagtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtc 10155988  T
Q  259 gcctggccatagaac 273  Q
    ||| |||| ||||||    
T  10155987 gccgggccttagaac 10155973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 3346843 - 3346903
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||||||||||||| | |||||||||||||||||||| |||||||| || |||||||    
T  3346843 aaattgtccaatttataggggtttatataagaaattcatagggatttacacaacaaattgc 3346903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 30745401 - 30745461
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||||||||||||| |||||||| |||||||||| ||| |||||||||| |||||||    
T  30745401 aaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaaattgc 30745461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 30766852 - 30766912
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||||||||||||| |||||||| |||||||||| ||| |||||||||| |||||||    
T  30766852 aaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaaattgc 30766912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 22683341 - 22683290
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtaca 91  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||||||||    
T  22683341 gaaaggactaaaactagtaacggagcaaaacataggggaccaaattggtaca 22683290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 23908342 - 23908400
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    |||||||||||||||||| ||||||||||||||||||||||  ||||||| || |||||    
T  23908342 aaattgtccaatttatagggatttatataagaaattcataggaatttacacaaaaaatt 23908400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 42456629 - 42456686
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaat 216  Q
    |||||| ||||||||||| | ||||||||||||||||||||  |||||||||||||||    
T  42456629 aaattgcccaatttataggggtttatataagaaattcataggaatttacataagaaat 42456686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 47022759 - 47022873
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 258  Q
    |||||| | |||||||||   ||||||||||||||||||||||||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||    
T  47022759 aaattgcctaatttataggagtttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtc 47022858  T
Q  259 gcctggccatagaac 273  Q
    ||| |||| ||||||    
T  47022859 gccgggccttagaac 47022873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 7742850 - 7742790
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | |||||||||||||||||||  |||||||| ||||||||||    
T  7742850 aaattgcccaatttataggggtttatataagaaattcataaggatttacacaagaaattgc 7742790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 49902525 - 49902585
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| || |||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  49902525 aaattgccctatttataggggtttatataagaaattcatagggatttacacaagaaattgc 49902585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 13131953 - 13132011
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    |||||||||||||||||| ||||||||||| ||||| | ||  ||||||||||||||||    
T  13131953 aaattgtccaatttatagtgatttatataaaaaatttagaggaatttacataagaaatt 13132011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 29149619 - 29149561
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| || |||||    
T  29149619 aaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaatt 29149561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 44462549 - 44462491
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    |||||||| ||||||||||| ||| ||||||||||||| | |||||||||||| |||||    
T  44462549 aaattgtctaatttatagaggtttgtataagaaattcagatagatttacataaaaaatt 44462491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 5558366 - 5558425
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||||||||||||| | ||||||||||||||||  | || |||||||||||||||||    
T  5558366 aaattgtccaatttataggggtttatataagaaattcgga-aggtttacataagaaattgc 5558425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 10907719 - 10907659
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    ||||||||  |||||||| | ||||||||||||||||| ||  ||||||||||||||||||    
T  10907719 aaattgtctgatttataggggtttatataagaaattcagaggaatttacataagaaattgc 10907659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 273
Target Start/End: Complemental strand, 42517344 - 42517251
Alignment:
Q  180 tttatataagaaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtcgcctggccatagaac 273  Q
    |||||||||||||||||||| |||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||||| |||| ||||||    
T  42517344 tttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaac 42517251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 5975045 - 5975104
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattg 218  Q
    |||||| | ||||||||| | |||||||||||||||| ||| |||||||| |||||||||    
T  5975045 aaattgcctaatttataggggtttatataagaaattcttagggatttacacaagaaattg 5975104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 10824516 - 10824567
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtaca 91  Q
    ||||||||||||||||| | || ||||||||||| |||| ||||||||||||    
T  10824516 gaaaggactaaaactaggaacggagcaaaacataggggatcaaattggtaca 10824567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 19056297 - 19056348
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtaca 91  Q
    |||| |||| ||||||||| |||||||||||| | |||||||||||||||||    
T  19056297 gaaaagacttaaactagtaacgaagcaaaacacaggggaccaaattggtaca 19056348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 26835395 - 26835455
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    ||||||| ||||||||||   |||||||||||||||||||   |||||||||| |||||||    
T  26835395 aaattgttcaatttataggagtttatataagaaattcatatgaatttacataataaattgc 26835455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 13884619 - 13884491
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| || |||||||||||||||||||||||    
T  13884619 agagaaactaccagaaaagactaaaactagtaacgaagcaaaacatagggggccaaattggtacaaattatagttaggggaccaaattgagacaatcaat 13884520  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    |||||||||||||| ||||||||||||||    
T  13884519 taagttaagggaccgggtgattgaataag 13884491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 13884706 - 13884833
Alignment:
Q  28 gagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaatt 127  Q
    ||||||||| |  ||||||||||||| |||| ||||||||||||||  |||||||||||||||||||||||| || ||||| ||||||||||||||||||    
T  13884706 gagaaactaacaaaaaggactaaaaccagtaacgaagcaaaacatagaggaccaaattggtacaaattatagttaggggactaaattgagacaatcaatt 13884805  T
Q  128 aagttaagggaccaggtgattgaataag 155  Q
    ||||||||||||| ||||||||||||||    
T  13884806 aagttaagggaccgggtgattgaataag 13884833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 42126512 - 42126378
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||| |||||||||||| ||  | | |||||||||||||| |||    
T  42126512 agagaaactaccagaaaggactaaaactagtagcgaagcaaaacatagggggccaaattgatacaaattatagttagagaatcaaattgagacaattaat 42126413  T
Q  127 taagttaagggaccaggtgattgaataagtctaaa 161  Q
    |||||||||||||| |||||||||||||| |||||    
T  42126412 taagttaagggaccgggtgattgaataagcctaaa 42126378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 29714672 - 29714544
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | |||| || |||| |||||| | |||||||| ||| ||||||||||||||||||| ||||| |  |||||||||||||||||||||||    
T  29714672 agagaaactaacagaaatgattaaagctagtaacaaagcaaaatataggggaccaaattggtacaaactatagtttggggaccaaattgagacaatcaat 29714573  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    |||||||||||||| ||||||||||||||    
T  29714572 taagttaagggaccgggtgattgaataag 29714544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 11867899 - 11868032
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| |  |||||||||||||||||  | || |||||||||  ||||||||||| |||||||||||| || || ||||||||||||||||||||    
T  11867899 agagaaactaacataaaggactaaaactagtgacaaatcaaaacatagaggaccaaattgatacaaattatagttaaggaaccaaattgagacaatcaat 11867998  T
Q  127 taagttaagggaccaggtgattgaataagtctaaa 161  Q
    |||||||| |||||||||||||||||||| |||||    
T  11867999 taagttaa-ggaccaggtgattgaataagcctaaa 11868032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 2554067 - 2554188
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | ||||| |||||||| |||| | |||||||||||| | ||||||||||| ||||||||||| || |||| ||||||||||||||||||    
T  2554067 agagaaactaacagaaagaactaaaacaagtaacaaagcaaaacataggagaccaaattggaacaaattatagttaggggatcaaattgagacaatcaat 2554166  T
Q  127 taagttaagggaccaggtgatt 148  Q
    ||||||||||||| ||||||||    
T  2554167 taagttaagggactaggtgatt 2554188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 29714777 - 29714879
Alignment:
Q  45 gactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggaccaggt 144  Q
    ||||||||||||||  |||||||||||||  ||||||||||| |||||||||||| || ||||||||||| | |||||||||||||||||||||||||||    
T  29714777 gactaaaactagtaatgaagcaaaacatagaggaccaaattgatacaaattatagttaagggaccaaattaaaacaatcaattaagttaagggaccaggt 29714876  T
Q  145 gat 147  Q
    |||    
T  29714877 gat 29714879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 42126601 - 42126729
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | |||| |||||||| ||||  |  |||||||| ||  |||||||||||||||||||||||| || |||| |||||||||| |||||||    
T  42126601 agagaaactaacagaaatgactaaaattagtgacagagcaaaacttagaggaccaaattggtacaaattatagttaggggatcaaattgagataatcaat 42126700  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    |||||||||||||| ||||||||||||||    
T  42126701 taagttaagggaccgggtgattgaataag 42126729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 42072485 - 42072599
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 258  Q
    |||||||||||||||||| | |||||||||||||||||||| |||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||    
T  42072485 aaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtc 42072584  T
Q  259 gcctggccatagaac 273  Q
    ||| |||||||||||    
T  42072585 gccgggccatagaac 42072599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 16591446 - 16591386
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| |||||||||||||||||| |||| ||||||||||||||||||    
T  16591446 aaattgcccaatttatagtgatttatataagaaattcttagaaatttacataagaaattgc 16591386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 21525415 - 21525475
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||||||||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  21525415 aaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 21525475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 35806851 - 35806911
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||    
T  35806851 aaattgcccaatttataggggtttatataagaaattcatagagatttacacaagaaattgc 35806911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 16523170 - 16523222
Alignment:
Q  166 ccaatttatagagatttatataagaaattcatagagatttacataagaaattg 218  Q
    ||||||||||| |||||||||||||||||||||| |||||||||| |||||||    
T  16523170 ccaatttatagggatttatataagaaattcatagggatttacatatgaaattg 16523222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 14996678 - 14996761
Alignment:
Q  29 agaaactacccgaaaggactaaaactagtatcgaagcaaaacata-cgggaccaaattggtacaaattatagatatgggaccaa 111  Q
    |||||||| | ||||||||||||||||||| | ||||||||||||  |||| |||||||||||||||||||  || ||||||||    
T  14996678 agaaactaacagaaaggactaaaactagtaacaaagcaaaacatagggggatcaaattggtacaaattataattaggggaccaa 14996761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 22324653 - 22324711
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| ||||||||    
T  22324653 aaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaatt 22324711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 26021460 - 26021513
Alignment:
Q  166 ccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    ||||||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  26021460 ccaatttataggggtttatataagaaattcatagggatttacaaaagaaattgc 26021513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 2554050 - 2554002
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggt 88  Q
    ||||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  2554050 gaaaggactaaaactagtaacgaagtaaaacataggggaccaaattggt 2554002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 24065330 - 24065390
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| |||||||||||   ||||||||||||||||||||||||||| || |||||||||    
T  24065330 aaattgcccaatttataggagtttatataagaaattcatagagatttatatgagaaattgc 24065390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 33934440 - 33934380
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | ||||||||||||||||||||  ||||||| ||||||||||    
T  33934440 aaattgcccaatttataggggtttatataagaaattcataggaatttacaaaagaaattgc 33934380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 42013929 - 42013989
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| |||||||||||   |||||||||||||||||||| |||||||| ||||||||||    
T  42013929 aaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattgc 42013989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 14996659 - 14996608
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtaca 91  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||| |||||    
T  14996659 gaaaagactaaaactagtaacgaagcaaaacataggggaccaaattagtaca 14996608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 43416360 - 43416265
Alignment:
Q  60 cgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggaccaggtgattgaataag 155  Q
    |||| ||||||||| | ||  |||||| |||||||||||| || ||||  ||||| |||||||||||||||||||| ||||   ||||||||||||    
T  43416360 cgaaacaaaacataggagattaaattgatacaaattatagttaggggattaaattaagacaatcaattaagttaagagaccgaatgattgaataag 43416265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 16819037 - 16818984
Alignment:
Q  166 ccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    ||||||||||| | |||||||||||||||||  |||||||||| ||||||||||    
T  16819037 ccaatttataggggtttatataagaaattcaaggagatttacaaaagaaattgc 16818984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 19334840 - 19334900
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||| ||||||||||| ||||||||| |||||||||   ||||| ||||||||||||    
T  19334840 aaattgtctaatttatagaggtttatataaaaaattcataagaatttatataagaaattgc 19334900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 29714742 - 29714691
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtaca 91  Q
    ||||||||||||||||||| || || |||||||| | |||||||||||||||    
T  29714742 gaaaggactaaaactagtaacggagtaaaacataggagaccaaattggtaca 29714691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 26745991 - 26746067
Alignment:
Q  63 agcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggac 139  Q
    |||||||| ||  |||| || |||||||||||||||  || |||||||| |||| |||| ||| |||||||||||||    
T  26745991 agcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttgatacaaacaaataagttaagggac 26746067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 43282915 - 43282863
Alignment:
Q  166 ccaatttatagagatttatataagaaattcatagagatttacataagaaattg 218  Q
    ||||||||||| ||||||||||| ||||||| |   |||||||||||||||||    
T  43282915 ccaatttatagggatttatataataaattcagaagaatttacataagaaattg 43282863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 46003465 - 46003596
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||||| |||||||||||||||||||  ||||||||||| | |||| |||||||||||||||| ||| || |||||||||||||||||||||||    
T  46003465 agagaaactaccagaaaggactaaaactagtaatgaagcaaaacaaaggggatcaaattggtacaaattttagttaggggaccaaattgagacaatcaat 46003564  T
Q  127 taagttaagggaccaggtgattgaataagtct 158  Q
    |||||||||||||||| ||||| |||||||||    
T  46003565 taagttaagggaccagatgattaaataagtct 46003596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 40244756 - 40244627
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacggga-ccaaattggtacaaattatagatatgggaccaaattgagacaatcaa 125  Q
    |||||||||| | |||| |||||||||||||| | |||||||||||| |||| ||||||||||||||||||||| || ||||||||||||||||||||||    
T  40244756 agagaaactaacagaaatgactaaaactagtaacaaagcaaaacataggggaaccaaattggtacaaattatagttaagggaccaaattgagacaatcaa 40244657  T
Q  126 ttaagttaagggaccaggtgattgaataag 155  Q
    ||||||||||||| | | ||||||||||||    
T  40244656 ttaagttaagggatcggatgattgaataag 40244627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 51663467 - 51663595
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | |||| |||||||||||||| |  |||||||||||  ||||||||||| |||||||||||| || |||||||||||||||||||||||    
T  51663467 agagaaactaacagaaatgactaaaactagtaacatagcaaaacatagaggaccaaattgctacaaattatagttaggggaccaaattgagacaatcaat 51663566  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    |||||||||||||| | ||||||||||||    
T  51663567 taagttaagggaccggatgattgaataag 51663595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 51663380 - 51663252
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||| ||||| |||||| |||||||||||| ||  |||||| ||| | |||||||||    
T  51663380 agagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggactaaattgatacaaattatagttagtggaccatattaaaacaatcaat 51663281  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    ||||||||| |||| ||||||| ||||||    
T  51663280 taagttaagagaccgggtgattaaataag 51663252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 20538056 - 20537930
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    ||||||||||   |||||||||||||||||||  ||||||||||||| ||||||||||||| ||||||||||| || |||| |||||||| |  ||||||    
T  20538056 agagaaactaatagaaaggactaaaactagtaatgaagcaaaacataggggaccaaattggaacaaattatagttaggggatcaaattgataatatcaat 20537957  T
Q  127 taagttaagggaccaggtgattgaata 153  Q
    |||||||||||||||| ||||| ||||    
T  20537956 taagttaagggaccagatgattcaata 20537930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 40364194 - 40364301
Alignment:
Q  46 actaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggaccaggtg 145  Q
    ||||||||||||| || | ||||||||| |||| |||||||||||||||||||| || | ||||||||||| |||||||||||||||||||||||| |||    
T  40364194 actaaaactagtaacggaacaaaacata-gggatcaaattggtacaaattatagttaggagaccaaattgaaacaatcaattaagttaagggaccaagtg 40364292  T
Q  146 attgaataa 154  Q
    |||||||||    
T  40364293 attgaataa 40364301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 20538151 - 20538279
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | |||| |||||||||||||| || |||||||||||    || |||||| |||||||||||| || |||| ||||||||||||||||||    
T  20538151 agagaaactaacagaaatgactaaaactagtaacggagcaaaacatagataactaaattgatacaaattatagttaggggatcaaattgagacaatcaat 20538250  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    ||| |||| ||||| ||||||||||||||    
T  20538251 taaattaaaggaccgggtgattgaataag 20538279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 46003378 - 46003251
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| |  |||||||||||||| ||| |  | || ||||||  ||||||||||| |||||||||||| || ||||||||||| | |||||||||    
T  46003378 agagaaactaacaaaaaggactaaaacttgtaacagaacagaacatagaggaccaaattgatacaaattatagttaggggaccaaattaaaacaatcaat 46003279  T
Q  127 taagttaagggaccaggtgattgaataa 154  Q
    |||||||| ||||| |||||||||||||    
T  46003278 taagttaaaggaccgggtgattgaataa 46003251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 40364171 - 40364043
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| |  ||| ||||||||||| || || ||||||| | | |||| ||||||| |||||||||||  |||||||||||||| ||| |||||||    
T  40364171 agagaaactaacaaaaatgactaaaactaataacggagcaaaatacaggggatcaaattgatacaaattataattatgggaccaaattaagataatcaat 40364072  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    ||||||||||||   |||||| |||||||    
T  40364071 taagttaagggattgggtgatcgaataag 40364043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 3178760 - 3178819
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattg 218  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  3178760 aaattgcccaatttatagagatttatataagaaattcatagggatttacacaagaaattg 3178819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 13856156 - 13856215
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattg 218  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  13856156 aaattgtccaatttatagggatttatataagaaattcatagggatttacacaagaaattg 13856215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 10839451 - 10839391
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||    
T  10839451 aaattgcccaatttatagaggtttatataagaaattcagagaaatttacataagaaattgc 10839391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 40244873 - 40244933
Alignment:
Q  95 tatagatatgggaccaaattgagacaatcaattaagttaagggaccaggtgattgaataag 155  Q
    ||||| || ||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  40244873 tatagttaggggaccaaattgagacaatcaattaagttaagggacggggtgattgaataag 40244933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 5391514 - 5391573
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattg 218  Q
    |||||||||||||||||| | |||||||||||||||||||| |||||||| |||||||||    
T  5391514 aaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 5391573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 19649443 - 19649385
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    |||||||||||||||||  | |||||||||||||||||||| |||||||||||||||||    
T  19649443 aaattgtccaatttataagggtttatataagaaattcatagcgatttacataagaaatt 19649385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 6280431 - 6280370
Alignment:
Q  158 taaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    ||||||||| ||||||||||| |||||||||||||||||  || ||||||||||||||||||    
T  6280431 taaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 6280370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 8950575 - 8950515
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| ||||||||||||||||||||||  ||||||| ||||||||||    
T  8950575 aaattgcccaatttatagggatttatataagaaattcataggaatttacacaagaaattgc 8950515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 21853254 - 21853314
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  21853254 aaattgcccaatttatagggttttatataagaaattcatagggatttacacaagaaattgc 21853314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 20382583 - 20382634
Alignment:
Q  166 ccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    ||||||||||| | |||||||||||||||||||| |||||||||||||||||    
T  20382583 ccaatttataggggtttatataagaaattcatagggatttacataagaaatt 20382634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 46003395 - 46003446
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtaca 91  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  46003395 gaaaggactaaaactagtaacgaagcaaaacatagaggaccaaattggtaca 46003446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 1781819 - 1781879
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||| | | ||||||||||||||||| || |||||||||||||||||||    
T  1781819 aaattgcccaatttattggggtttatataagaaattcagagggatttacataagaaattgc 1781879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 36539689 - 36539749
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| |  |||||||||||||| |||| |||||||||||||||||||    
T  36539689 aaattgcccaatttataggggattatataagaaatttatagggatttacataagaaattgc 36539749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 40845988 - 40845928
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| || |||||||    
T  40845988 aaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattgc 40845928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 54546961 - 54547021
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||||||||||||| | ||||||||||||||||| ||  |||||| |||||||||||    
T  54546961 aaattgtccaatttataggggtttatataagaaattcaaaggaatttacgtaagaaattgc 54547021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 19644398 - 19644340
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    ||||||| ||||||||| |||||||||||| ||||||||||  |||||||||| |||||    
T  19644398 aaattgttcaatttataaagatttatataaaaaattcatagcaatttacataaaaaatt 19644340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 23467565 - 23467507
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| || |||||    
T  23467565 aaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaatt 23467507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 44995040 - 44994925
Alignment:
Q  159 aaattgtccaatttata-gagatttatataagaaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggt 257  Q
    |||||| |||||||||| | | |||||||||||||||||||| |||||||| ||||||||||       |||| |||||| || ||||| | || |||||    
T  44995040 aaattgcccaatttataaggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgagcgagtacccggggt 44994941  T
Q  258 cgcctggccatagaac 273  Q
    |||| |||| ||||||    
T  44994940 cgccgggccttagaac 44994925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 27642724 - 27642777
Alignment:
Q  166 ccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    ||||||||||  ||||||||||||||||||| |  |||||||||||||||||||    
T  27642724 ccaatttataaggatttatataagaaattcaaaaggatttacataagaaattgc 27642777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 32352904 - 32352964
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| | ||||||||| | |||||||||||||||||||| |||||| | ||||||||||    
T  32352904 aaattgcctaatttataggggtttatataagaaattcatagggatttatacaagaaattgc 32352964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 39352251 - 39352310
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||  ||||||||||||||||||||||||||| | ||| ||||| ||||||||||||    
T  39352251 aaattgttaaatttatagagatttatataagaaatttagagaaattta-ataagaaattgc 39352310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 43347407 - 43347347
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||| ||| | ||||||||||||||||| ||  ||||||||||||||||||    
T  43347407 aaattgcccaatttgtaggggtttatataagaaattcagaggaatttacataagaaattgc 43347347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 20538122 - 20538076
Alignment:
Q  45 gactaaaactagtatcgaagcaaaacatacgggaccaaattggtaca 91  Q
    ||||||||||| || | |||||||||||| |||||||||||||||||    
T  20538122 gactaaaactaataacaaagcaaaacataggggaccaaattggtaca 20538076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 33103799 - 33103860
Alignment:
Q  158 taaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| |||||||||||| || |||||||||||||| |  |  ||||||||||||||||||    
T  33103799 taaattatccaatttatagggacttatataagaaatttaagggaatttacataagaaattgc 33103860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 47889783 - 47889823
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatag 199  Q
    |||||| |||||||||||  |||||||||||||||||||||    
T  47889783 aaattgcccaatttataggaatttatataagaaattcatag 47889823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 22922 - 23050
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | ||||||||||||||||||| || |||||||||||  ||| |||||||||||||||||||| || ||||||||||| |||||||||||    
T  22922 agagaaactaacagaaaggactaaaactagtaacggagcaaaacatagaggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaat 23021  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    |||||||||||||| ||||||||||||||    
T  23022 taagttaagggaccgggtgattgaataag 23050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 16973194 - 16973066
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | ||||| | ||||||||||| |||||||||||||| ||||||||||||||||||| ||||| || ||||||||||| |||||||||||    
T  16973194 agagaaactaacagaaagaattaaaactagtaacgaagcaaaacataggggaccaaattggtacaaactatagttaggggaccaaattaagacaatcaat 16973095  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    |||||||||||||| ||||||||||||||    
T  16973094 taagttaagggaccgggtgattgaataag 16973066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 44594455 - 44594583
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||||| |||| |||||||||||||| ||||||||||||||  ||||||||||| |||||||||||| || |||||||||||||||||||||||    
T  44594455 agagaaactaccagaaatgactaaaactagtaacgaagcaaaacataatggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaat 44594554  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    ||| |||| ||||| ||||||||||||||    
T  44594555 taaattaaaggaccgggtgattgaataag 44594583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 2916534 - 2916380
Alignment:
Q  1 attggtacataagttaacnnnnnnnnagagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattataga 100  Q
    ||||||||||||||||||        |||||||||| | ||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||||     
T  2916534 attggtacataagttaacgttttttgagagaaactaacagaaaggattaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagt 2916435  T
Q  101 tatgggaccaaattgagacaatcaattaagttaagggaccaggtgattgaataag 155  Q
    || |||| ||||||||||||||||||||||||||| || | ||||||||||||||    
T  2916434 taggggatcaaattgagacaatcaattaagttaagagatcgggtgattgaataag 2916380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 38982774 - 38982901
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||||| |||| ||||||||||||||  ||||||||||||| || ||||||||| |||||||||||| || |||||||||||||||||||||||    
T  38982774 agagaaactaccagaaatgactaaaactagtaatgaagcaaaacataaggaaccaaattgatacaaattatagttaagggaccaaattgagacaatcaat 38982873  T
Q  127 taagttaagggaccaggtgattgaataa 154  Q
    |||||||||||||  ||||| |||||||    
T  38982874 taagttaagggacttggtgactgaataa 38982901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 16973281 - 16973409
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||  | |||| ||||||||||||||  | |||||||||||  |||||||||||  ||||||||||| || |||||||||||||||||||||||    
T  16973281 agagaaactgacagaaatgactaaaactagtaatggagcaaaacatagaggaccaaattgacacaaattatagttaggggaccaaattgagacaatcaat 16973380  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    ||||||||||||||| |||||||||||||    
T  16973381 taagttaagggaccatgtgattgaataag 16973409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 40987787 - 40987659
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| |  ||| |||||||||||||| | || ||||||||| | ||| ||||||||||||||||||| || || ||||||||||||||||||||    
T  40987787 agagaaactaacataaaagactaaaactagtaacaaatcaaaacatatgagactaaattggtacaaattatagttagggaaccaaattgagacaatcaat 40987688  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    |||||||||||||| | ||||| ||||||    
T  40987687 taagttaagggaccggatgattaaataag 40987659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 44594366 - 44594250
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatggg-accaaattgagacaatcaattaagttaaggga 138  Q
    ||||| ||||||||||||| |  |||||||||||  ||||||||||| |||||||||||| || ||  ||||||||||||||||||||||||||||||||    
T  44594366 gaaagaactaaaactagtaacagagcaaaacatagaggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaaggga 44594267  T
Q  139 ccaggtgattgaataag 155  Q
    || ||||||||||||||    
T  44594266 ccgggtgattgaataag 44594250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 38982674 - 38982559
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggac 139  Q
    ||||||||||||||||| | ||||||||||||||   ||||||||||||||||||||||| || ||  ||||||||||||||||||||||||||| |||     
T  38982674 gaaaggactaaaactagcaacgaagcaaaacataaatgaccaaattggtacaaattatagttagggagccaaattgagacaatcaattaagttaaaggat 38982575  T
Q  140 caggtgattgaataag 155  Q
    | ||||||||| ||||    
T  38982574 cgggtgattgattaag 38982559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 11533674 - 11533790
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacggg-accaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaaggga 138  Q
    |||| ||||||||||||||   |||||||||||| ||| |||||||||||||||||||||| |  ||||||||||||||||||||| |||||||||| ||    
T  11533674 gaaatgactaaaactagtaataaagcaaaacatagggggaccaaattggtacaaattatagttgggggaccaaattgagacaatcacttaagttaagaga 11533773  T
Q  139 ccaggtgattgaataag 155  Q
    || | ||||||||||||    
T  11533774 cctgatgattgaataag 11533790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 2916594 - 2916721
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | |||||||| |||||||||| |  ||||||| |||  ||| ||| ||||||||||| |||| || |||||||||||||||||||||||    
T  2916594 agagaaactaacagaaaggaccaaaactagtaacagagcaaaatatagaggatcaagttggtacaaataatagttaggggaccaaattgagacaatcaat 2916693  T
Q  127 taagttaagggaccaggtgattgaataa 154  Q
    |||||||||| |  || |||||||||||    
T  2916694 taagttaaggaattagatgattgaataa 2916721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 24126146 - 24126245
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| |  ||||||||||||||||      ||||||||||| ||||||||||||||||||||||||| || | ||||||||||||| |||||||    
T  24126146 agagaaactaacataaaggactaaaactag------agcaaaacataagggaccaaattggtacaaattatagttaggagaccaaattgagaaaatcaat 24126239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 13559519 - 13559646
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| |  ||| ||||||| |||||| |  |||||| || | |||||||| ||| |||||||||||| || || |||||||||| |||||||||    
T  13559519 agagaaactaacataaatgactaaatctagtaacagagcaaagcacaagggaccaa-ttgatacaaattatagttagggaaccaaattgaaacaatcaat 13559617  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    |||||||||||||| | ||||||||||||    
T  13559618 taagttaagggaccggatgattgaataag 13559646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 6318529 - 6318470
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattg 218  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  6318529 aaattgcccaatttatagggatttatataagaaattcatagggatttacataagaaattg 6318470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 24125876 - 24125975
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | ||||| |||||||||||      ||||||||||| ||||||||||||||||||||||||| || | ||||||||||||| ||| |||    
T  24125876 agagaaactaacagaaagaactaaaactag------agcaaaacataagggaccaaattggtacaaattatagttaggagaccaaattgagaaaattaat 24125969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 29846499 - 29846559
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||||||||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  29846499 aaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 29846559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 40987899 - 40987987
Alignment:
Q  63 agcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggaccaggtgattgaa 151  Q
    ||||||| ||| |||||||||||  |||||||||||| ||  ||| |||||||||||||| |||||||||||| |||| ||||||||||    
T  40987899 agcaaaatataggggaccaaattaatacaaattatagttagaggatcaaattgagacaattaattaagttaagagaccgggtgattgaa 40987987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 24125737 - 24125672
Alignment:
Q  90 caaattatagatatgggaccaaattgagacaatcaattaagttaagggaccaggtgattgaataag 155  Q
    |||||||||| || |||| |||||||||||||||||||||||||||||||| | ||| ||||||||    
T  24125737 caaattatagttaggggatcaaattgagacaatcaattaagttaagggaccggttgagtgaataag 24125672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 42769829 - 42769715
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 258  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||    
T  42769829 aaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtc 42769730  T
Q  259 gcctggccatagaac 273  Q
    ||| |||| ||||||    
T  42769729 gccgggccttagaac 42769715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 14942115 - 14942055
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  14942115 aaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 14942055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 40277359 - 40277299
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||    
T  40277359 aaattgcccaatttatagggatttatataagaaatttatagggatttacataaaaaattgc 40277299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 41674777 - 41674717
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||||||||||||  | ||||||||| ||||||| ||||||||||||||||||||||    
T  41674777 aaattgtccaatttataagggtttatataaaaaattcagagagatttacataagaaattgc 41674717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 16973264 - 16973213
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtaca 91  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||||||||    
T  16973264 gaaaggactaaaactagtaacggagcaaaacataggggaccaaattggtaca 16973213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 33009730 - 33009789
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattg 218  Q
    |||||||||||||||||  ||||||||||| |||||||||| |||||| |||||||||||    
T  33009730 aaattgtccaatttataaggatttatataacaaattcatagggatttatataagaaattg 33009789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 2888098 - 2888156
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    ||||||| ||||||||||   ||||||||| ||||||||||||||||||||||||||||    
T  2888098 aaattgttcaatttataggagtttatataaaaaattcatagagatttacataagaaatt 2888156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 14186509 - 14186451
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| ||||||||    
T  14186509 aaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaatt 14186451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 3956629 - 3956743
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 258  Q
    ||||||||||||||| || | ||||||||| |||||||||| ||||||||||| ||||||        ||||||||||| ||  |||| |||| ||||||    
T  3956629 aaattgtccaatttacaggggtttatataataaattcatagggatttacataaaaaattgaaaattttttgggccggagcccgggcgagtgcccggggtc 3956728  T
Q  259 gcctggccatagaac 273  Q
     || |||||||||||    
T  3956729 accgggccatagaac 3956743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 19181605 - 19181665
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | ||||||||||||||||||||  ||||||| ||||||||||    
T  19181605 aaattgcccaatttataggggtttatataagaaattcataggaatttacacaagaaattgc 19181665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 38982704 - 38982755
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtaca 91  Q
    |||||||||||||| || | || ||||||||||| |||||||||||||||||    
T  38982704 gaaaggactaaaaccaggaacggagcaaaacataagggaccaaattggtaca 38982755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 44594385 - 44594436
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtaca 91  Q
    ||||||||||||||||| | || ||||||||||| ||||| |||||||||||    
T  44594385 gaaaggactaaaactaggaacggagcaaaacataggggactaaattggtaca 44594436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 14539775 - 14539715
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| | |||||||||  |||||||||||||||||| ||  | ||||||||||||||||    
T  14539775 aaattgcctaatttataggaatttatataagaaattcagaggaaattacataagaaattgc 14539715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 39161418 - 39161284
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||  | ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||| |||||    
T  39161418 agagaaactttcagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattaagacattcaat 39161319  T
Q  127 taagttaagggaccaggtgattgaataagtctaaa 161  Q
    |||||||| ||| | |||||||||||||| |||||    
T  39161318 taagttaaaggatcgggtgattgaataagcctaaa 39161284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 50509358 - 50509473
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggac 139  Q
    |||| |||||||| ||||| | |||||||||||| ||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||     
T  50509358 gaaaagactaaaattagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggat 50509457  T
Q  140 caggtgattgaataag 155  Q
    ||| ||||||||||||    
T  50509458 cagatgattgaataag 50509473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 55173470 - 55173603
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| |  ||| ||||||||| |||| | ||||||| |||| ||||||||||||||||||||||||| || | || ||||||||||||||||||    
T  55173470 agagaaactagcaaaaaagactaaaacaagtaacaaagcaaagcataggggaccaaattggtacaaattatagttaggagatcaaattgagacaatcaat 55173569  T
Q  127 taagttaagggaccaggtgattgaataagtctaa 160  Q
    |||||||||||||| |||||||||||||| ||||    
T  55173570 taagttaagggaccgggtgattgaataagcctaa 55173603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 47096914 - 47096802
Alignment:
Q  41 aaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggacc 140  Q
    ||||||||||||| |||| |||||||||||||| ||| | ||||||||||||||||| | || ||||||||||||||| ||||||||||||||||||| |    
T  47096914 aaaggactaaaacaagtaacgaagcaaaacatagggggc-aaattggtacaaattat-gttaggggaccaaattgagataatcaattaagttaagggatc 47096817  T
Q  141 aggtgattgaataag 155  Q
    |||||||||||||||    
T  47096816 aggtgattgaataag 47096802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 39161504 - 39161632
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | |||||||||||||||| || || |||||||||||  |||| ||||||||||||||||||| || ||||||||||| | |||||||||    
T  39161504 agagaaactaacagaaaggactaaaactaataacggagcaaaacatagaggactaaattggtacaaattatagttaggggaccaaattaaaacaatcaat 39161603  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    |||||||||| ||| | || |||||||||    
T  39161604 taagttaaggaaccggatggttgaataag 39161632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 37996177 - 37996068
Alignment:
Q  45 gactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggaccaggt 144  Q
    ||||||||||| || | |||||||||||| |||||||||||| |||||||||||| || ||||||||||||| ||||||| || | |||||||| |||||    
T  37996177 gactaaaactaataacaaagcaaaacataggggaccaaattgatacaaattatagttaagggaccaaattgaaacaatcattttaattaagggatcaggt 37996078  T
Q  145 gattgaataa 154  Q
    ||||||||||    
T  37996077 gattgaataa 37996068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 55173452 - 55173336
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacggg-accaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaaggga 138  Q
    ||||||||||||||||||| || ||||||| ||| ||| ||||||||  |||||||||||| || ||||||||||| ||||||||||||||||||||| |    
T  55173452 gaaaggactaaaactagtaacggagcaaaatatagggggaccaaattaatacaaattatagttaggggaccaaattaagacaatcaattaagttaaggaa 55173353  T
Q  139 ccaggtgattgaataag 155  Q
    || | |||| |||||||    
T  55173352 ccggatgatcgaataag 55173336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 47097017 - 47097142
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| |  ||| |||||||||||||| ||  ||||||||||   || |||||||||||||||||||| ||  |||| |||||||||||||||||    
T  47097017 agagaaactaacaaaaatgactaaaactagtaacggggcaaaacata---gatcaaattggtacaaattatagttagaggactaaattgagacaatcaat 47097113  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    ||||||||| || | | ||||||||||||    
T  47097114 taagttaagagatcggatgattgaataag 47097142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 11054515 - 11054573
Alignment:
Q  161 attgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  11054515 attgcccaatttatagaggtttatataagaaattcatagggatttacataagaaattgc 11054573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 17888621 - 17888507
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 258  Q
    |||||| ||||||||||| |  |||||||||||||||||||  |||||||||||||||||        ||||||||||| ||  |||| |||| ||||||    
T  17888621 aaattgcccaatttatagggggttatataagaaattcataggaatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtc 17888522  T
Q  259 gcctggccatagaac 273  Q
    |||||||||||||||    
T  17888521 gcctggccatagaac 17888507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 31377447 - 31377560
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 258  Q
    |||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||||||        ||||||||||| ||  |||| |||| ||||||    
T  31377447 aaattgcccaatttatagagggttatataagaaattcatagggatttacataagaaattg-aaaaaatttgggccggagcccgggcgagtgcccggggtc 31377545  T
Q  259 gcctggccatagaac 273  Q
    ||| |||||||||||    
T  31377546 gccgggccatagaac 31377560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 52632575 - 52632633
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||||| ||||||||    
T  52632575 aaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaatt 52632633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 16338284 - 16338170
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 258  Q
    |||||||||||||||||| ||||||||||| ||||||||||  ||||||| || |||||||       |||| ||||| |||  ||||||||| ||||||    
T  16338284 aaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaaaattggcccggaatccgggcgaatgcccggggtc 16338185  T
Q  259 gcctggccatagaac 273  Q
    ||| |||| ||||||    
T  16338184 gccgggccttagaac 16338170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 1535828 - 1535888
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  1535828 aaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 1535888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 49284414 - 49284474
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  49284414 aaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 49284474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 2623449 - 2623496
Alignment:
Q  108 ccaaattgagacaatcaattaagttaagggaccaggtgattgaataag 155  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||    
T  2623449 ccaaattgagacaatcaattaagttaagggaccgagtgattgaataag 2623496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 12792301 - 12792244
Alignment:
Q  160 aattgtccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    ||||| ||||||||||| | ||||||||||||||||| ||| ||||||||||||||||    
T  12792301 aattgcccaatttataggggtttatataagaaattcagagaaatttacataagaaatt 12792244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 37801328 - 37801275
Alignment:
Q  166 ccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||    
T  37801328 ccaatttatagggatttatataaaaaattcatagaaatttacacaagaaattgc 37801275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 47084076 - 47084129
Alignment:
Q  166 ccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    ||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||    
T  47084076 ccaatttataggggtttatataagaaattcagagaaatttacataagaaattgc 47084129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 20818624 - 20818684
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| |||||||||||   |||||||||||||||||||| |||||||| ||||||||||    
T  20818624 aaattgaccaatttataggagtttatataagaaattcatagggatttacaaaagaaattgc 20818684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 34241050 - 34241110
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | |||||||||||||||||||| ||| |||| ||||||||||    
T  34241050 aaattgcccaatttataggggtttatataagaaattcatagggatctacacaagaaattgc 34241110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 36012256 - 36012196
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| || |||||||    
T  36012256 aaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattgc 36012196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 50328853 - 50328913
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||||||||||||||| ||||||||||||||| | ||  ||||||| ||||||||||    
T  50328853 aaattgtccaatttatagaggtttatataagaaattaagaggaatttacaaaagaaattgc 50328913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 10094457 - 10094406
Alignment:
Q  166 ccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    ||||||||||| | ||||||||||||||||| ||| ||||||||||||||||    
T  10094457 ccaatttataggggtttatataagaaattcagagaaatttacataagaaatt 10094406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 25954807 - 25954867
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| |||||||||||   ||||||||||||||||||||  ||||||| ||||||||||    
T  25954807 aaattgcccaatttataggagtttatataagaaattcataggaatttacacaagaaattgc 25954867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 9742604 - 9742545
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattg 218  Q
    |||||| ||||||||||| | || |||||||||||||| ||  |||||||||||||||||    
T  9742604 aaattgcccaatttataggggttaatataagaaattcagaggaatttacataagaaattg 9742545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 39161487 - 39161436
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtaca 91  Q
    ||||||||||||||||| | || | ||||||||| |||||||||||||||||    
T  39161487 gaaaggactaaaactaggaacggatcaaaacatatgggaccaaattggtaca 39161436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 35322775 - 35322717
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    ||||||| |||||||||||| ||||||||||| ||||| ||| ||||| |||| |||||    
T  35322775 aaattgttcaatttatagaggtttatataagagattcagagaaatttatataaaaaatt 35322717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 46583612 - 46583554
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    |||||| | ||||||||| | |||||||||||||||||||| |||||||| || |||||    
T  46583612 aaattgcctaatttataggggtttatataagaaattcatagggatttacacaaaaaatt 46583554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 322620 - 322584
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattc 195  Q
    |||||||||||||||||| | ||||||||||||||||    
T  322620 aaattgtccaatttataggggtttatataagaaattc 322584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 9738212 - 9738136
Alignment:
Q  63 agcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggac 139  Q
    |||||||| ||  |||| || |||||||||||||||  || |||||||| |||  |||| |||||||||||||||||    
T  9738212 agcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaagggac 9738136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 19124801 - 19124749
Alignment:
Q  167 caatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    ||||||| |||  ||||||||||||||||| ||  ||||||||||||||||||    
T  19124801 caatttacagatgtttatataagaaattcagaggaatttacataagaaattgc 19124749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 46474051 - 46474111
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    ||||||| |||||||||  | ||||||||| ||||||| ||  ||||||||||||||||||    
T  46474051 aaattgtacaatttatatgggtttatataaaaaattcacaggaatttacataagaaattgc 46474111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 47096999 - 47096947
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacata-cgggaccaaattggtaca 91  Q
    |||||||||||||||||||  | |||||||||||  |||||||||||||||||    
T  47096999 gaaaggactaaaactagtaatggagcaaaacatagggggaccaaattggtaca 47096947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 21249492 - 21249364
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | ||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| |||||  || |||||||||||||||||||||||    
T  21249492 agagaaactaacagaaaggattaaaactagtaacgaagcaaaacataggggactaaattggtacaatttataattaggggaccaaattgagacaatcaat 21249393  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    || | ||||||||||||||||||||||||    
T  21249392 tacggtaagggaccaggtgattgaataag 21249364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 8457034 - 8456920
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 258  Q
    |||||| ||||||||||| |  ||||||||||||||||||| ||||||||||||||||||        ||||||||||| ||  |||| ||| |||||||    
T  8457034 aaattgcccaatttatagggggttatataagaaattcatagggatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcatggggtc 8456935  T
Q  259 gcctggccatagaac 273  Q
    ||| |||||||||||    
T  8456934 gccgggccatagaac 8456920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 10081202 - 10081261
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattg 218  Q
    |||||| ||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  10081202 aaattgcccaatttataggggtttatataagaaattcatagggatttacataagaaattg 10081261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 9738054 - 9737993
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagaga--tttacataagaaattg 218  Q
    |||||||||||||||||| |||||||||||||||||||||| ||  ||||||||||||||||    
T  9738054 aaattgtccaatttatagggatttatataagaaattcatagggatttttacataagaaattg 9737993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 11856352 - 11856410
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    |||||| ||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  11856352 aaattgcccaatttatagtgatttatataagaaattcagagcgatttacataagaaatt 11856410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 42119679 - 42119737
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaatt 217  Q
    |||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||||    
T  42119679 aaattgtccaatttatagaggtttatataagaaattcagaggaatttacataagaaatt 42119737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 38397655 - 38397769
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 258  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||    
T  38397655 aaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtc 38397754  T
Q  259 gcctggccatagaac 273  Q
    ||| |||| ||||||    
T  38397755 gccgggccttagaac 38397769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 23218542 - 23218602
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  23218542 aaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 23218602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 16618641 - 16618582
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattg 218  Q
    ||||||||||||||||||   |||||||||||||||||||| |||||||| |||||||||    
T  16618641 aaattgtccaatttataggagtttatataagaaattcatagggatttacacaagaaattg 16618582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 25560398 - 25560339
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattg 218  Q
    |||||||||||||||||||  ||||||||||||||| |||  ||||||||||||||||||    
T  25560398 aaattgtccaatttatagatgtttatataagaaatttataaggatttacataagaaattg 25560339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 29491483 - 29491425
Alignment:
Q  160 aattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    ||||||||||||||||| | || |||||||||||||||||| ||||||||||||||||||    
T  29491483 aattgtccaatttataggggtt-atataagaaattcatagaaatttacataagaaattgc 29491425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 33271341 - 33271282
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattg 218  Q
    |||||||||||||||||||| |||||||||||||||||  |  |||||||||||||||||    
T  33271341 aaattgtccaatttatagaggtttatataagaaattcaacggaatttacataagaaattg 33271282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 21249629 - 21249679
Alignment:
Q  106 gaccaaattgagacaatcaattaagttaagggaccaggtgattgaataagt 156  Q
    ||||||||| |||||||||||||||||||||||| || |||||||||||||    
T  21249629 gaccaaattaagacaatcaattaagttaagggacaagatgattgaataagt 21249679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 6257481 - 6257367
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 258  Q
    |||||| ||||||||||| | ||| |||||||||||||||| |||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||    
T  6257481 aaattgcccaatttataggggtttgtataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtc 6257382  T
Q  259 gcctggccatagaac 273  Q
    ||| |||| ||||||    
T  6257381 gccgggccttagaac 6257367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 37169104 - 37169044
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| || |||||||    
T  37169104 aaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattgc 37169044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 39862558 - 39862498
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | ||||||||||||||||||||  ||||||| ||||||||||    
T  39862558 aaattgcccaatttataggggtttatataagaaattcataggaatttacacaagaaattgc 39862498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 29790290 - 29790231
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattg 218  Q
    |||||| |||||||||| || |||||||||||||||||||   |||||||||||||||||    
T  29790290 aaattgcccaatttataaaggtttatataagaaattcataagaatttacataagaaattg 29790231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 21249561 - 21249511
Alignment:
Q  41 aaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtaca 91  Q
    |||||||||||||||||| |  ||||||||||| |||||||||||||||||    
T  21249561 aaaggactaaaactagtaacagagcaaaacataagggaccaaattggtaca 21249511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 614463 - 614403
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| | ||||||||| ||||||||||| ||||||| ||  ||||||||||||||||||    
T  614463 aaattgccaaatttatagggatttatataaaaaattcagaggaatttacataagaaattgc 614403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 15631670 - 15631730
Alignment:
Q  159 aaattgtccaatttatagaga-tttatataagaaattcatagagatttacataagaaattg 218  Q
    |||||||||||||||||| |  |||||||||||||||||||| |||||| | |||||||||    
T  15631670 aaattgtccaatttatagggggtttatataagaaattcatagggatttatacaagaaattg 15631730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 36769145 - 36769085
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| | |||| |||||| ||||||||||||||||| ||  ||||||||||||||||||    
T  36769145 aaattgcctaattcatagaggtttatataagaaattcagaggaatttacataagaaattgc 36769085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 15475457 - 15475408
Alignment:
Q  167 caatttatagagatttatataagaaattcatagagatttacataagaaat 216  Q
    ||||||||| |||||||||||| ||||| | ||| |||||||||||||||    
T  15475457 caatttatatagatttatataaaaaattaagagaaatttacataagaaat 15475408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 27916205 - 27916257
Alignment:
Q  167 caatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    ||||||||||   ||||||||||||||||| ||  ||||||||||||||||||    
T  27916205 caatttataggagtttatataagaaattcagaggaatttacataagaaattgc 27916257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 28715772 - 28715645
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| || |  |||||||| | ||||| |||    
T  28715772 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggaaaccaaattaaaacaattaat 28715673  T
Q  127 taagttaagggaccaggtgattgaataa 154  Q
    |||||||||||||| |||||||||||||    
T  28715672 taagttaagggaccgggtgattgaataa 28715645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 41986040 - 41985912
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | ||||||||||||| ||||| | |||||||||||| ||||||||||||  ||||||||||| || |||| ||||||||||||||||||    
T  41986040 agagaaactaacggaaaggactaaaattagtaacaaagcaaaacatatgggaccaaattgaaacaaattatagttaggggatcaaattgagacaatcaat 41985941  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    |||||||||||||  ||||||||||||||    
T  41985940 taagttaagggactgggtgattgaataag 41985912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 30862330 - 30862215
Alignment:
Q  45 gactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggaccaggt 144  Q
    |||||||||||||| | |||||||| ||| ||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||   |    
T  30862330 gactaaaactagtaacaaagcaaaatataggggaccaaattggtacaaattatagttaggggaccaaattcagacaatcaattaagttaagggaccgaat 30862231  T
Q  145 gattgaataagtctaa 160  Q
    ||||||||||| ||||    
T  30862230 gattgaataagcctaa 30862215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 28715859 - 28715993
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | |||| |||||||||||||  |  |||||||| ||  |||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  28715859 agagaaactaacagaaatgactaaaactagtgactgagcaaaacttagaggaccaaattggtacaaattatagttaggggaccaaattaagacaatcaat 28715958  T
Q  127 taagttaagggaccaggtgattgaataagtctaaa 161  Q
    |||||||||||||| ||| |||||||||| |||||    
T  28715959 taagttaagggaccgggtaattgaataagcctaaa 28715993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 6474411 - 6474282
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaa-catacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaa 125  Q
    |||||||||| | |||| |||||||||||||| | |||||||| |||| |||||||||||| || ||||||||| || |||| |||||||||||||||||    
T  6474411 agagaaactaacagaaaagactaaaactagtaacaaagcaaaaacataggggaccaaattgatataaattatagttaggggatcaaattgagacaatcaa 6474312  T
Q  126 ttaagttaagggaccaggtgattgaataag 155  Q
    ||||||||||||| | ||| ||||||||||    
T  6474311 ttaagttaagggatccggtaattgaataag 6474282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 6474498 - 6474631
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| |  |||||||||||||||||| |  |||||| |||| |||| ||||| ||||||| |||||| || | ||||||||| |||||||||||    
T  6474498 agagaaactaacataaaggactaaaactagtaacagagcaaagcataagggagcaaatcggtacaa-ttatagttaggagaccaaattaagacaatcaat 6474596  T
Q  127 taagttaagggaccaggtgattgaataagtctaaa 161  Q
    |||||||||||| | |||||||||||||| |||||    
T  6474597 taagttaagggatcgggtgattgaataagcctaaa 6474631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 47373679 - 47373792
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| |  |||||| ||||||||||| |  | ||||||||| | ||| ||||||||||||||||||  || |||||||||||||||||||||||    
T  47373679 agagaaactaacataaaggattaaaactagtaacacatcaaaacatatgagactaaattggtacaaattataattaggggaccaaattgagacaatcaat 47373778  T
Q  127 taagttaagggacc 140  Q
    ||||||||||||||    
T  47373779 taagttaagggacc 47373792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 30862437 - 30862564
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | |||| |||||||| ||||| |  ||||||||||| |||||||||||| |||||||||||| || || || ||||||| |||||||||    
T  30862437 agagaaactaacagaaaagactaaaattagtaacagagcaaaacataagggaccaaattgatacaaattatagttagggaacaaaattgaaacaatcaat 30862536  T
Q  127 taagttaagggaccaggtgattgaataa 154  Q
    | | |||||||||||  |||||||||||    
T  30862537 tcaattaagggaccaattgattgaataa 30862564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 47373620 - 47373464
Alignment:
Q  1 attggtacataagttaacnnnnnnnnagagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattataga 100  Q
    ||||||||||||||||||        |||||||||| |  ||| |||||||||||| | |  ||||||||||| |||||||||||||||||||||||| |    
T  47373620 attggtacataagttaacgttttttgagagaaactaacataaatgactaaaactagcaacagagcaaaacataggggaccaaattggtacaaattatata 47373521  T
Q  101 --tatgggaccaaattgagacaatcaattaagttaagggaccaggtgattgaataag 155  Q
      ||  ||| ||||||||||||||||||||||||||| || |  |||||||||||||    
T  47373520 attagaggatcaaattgagacaatcaattaagttaagagatcgagtgattgaataag 47373464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 41986183 - 41986253
Alignment:
Q  85 tggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggaccaggtgattgaataag 155  Q
    ||||||||||||||| || |||| ||||||||||||| |||||||||||||| ||| ||||||||||||||    
T  41986183 tggtacaaattatagttaggggatcaaattgagacaaacaattaagttaaggaaccgggtgattgaataag 41986253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 22226666 - 22226723
Alignment:
Q  104 gggaccaaattgagacaatcaattaagttaagggaccaggtgattgaataagtctaaa 161  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||    
T  22226666 gggaccaaattgagacaatcaattaagctaagggatcaggtgattgaataagcctaaa 22226723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 19334631 - 19334571
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||||||||||||| | ||||||||||||||||||||  ||||||||||||||||||    
T  19334631 aaattgtccaatttataggggtttatataagaaattcataggtatttacataagaaattgc 19334571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 29981184 - 29981124
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||||||||||||||  |||||||||||||||||||| |||||||| ||||||||||    
T  29981184 aaattgtccaatttatagaagtttatataagaaattcatagggatttacacaagaaattgc 29981124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 44164814 - 44164700
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 258  Q
    |||||| ||||||||||| | ||||||||||||||||||||| ||||||| ||||||||||       |||| |||||| ||  |||| |||| ||||||    
T  44164814 aaattgcccaatttataggggtttatataagaaattcatagaaatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtc 44164715  T
Q  259 gcctggccatagaac 273  Q
    ||| |||| ||||||    
T  44164714 gccgggccttagaac 44164700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 10576730 - 10576790
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  10576730 aaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 10576790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 32876601 - 32876541
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||||||||||||| | |||||||||||||||||||| ||| |||| ||||||||||    
T  32876601 aaattgtccaatttataggggtttatataagaaattcatagggatctacacaagaaattgc 32876541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 34259575 - 34259635
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  34259575 aaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 34259635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 34707173 - 34707233
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  34707173 aaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 34707233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 29556010 - 29555951
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattg 218  Q
    |||||||||||||||||| | ||||||||||||||||||||  ||||||| |||||||||    
T  29556010 aaattgtccaatttataggggtttatataagaaattcataggaatttacacaagaaattg 29555951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 33057728 - 33057669
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattg 218  Q
    ||||||| |||||||||| |  ||||||||||||||||||| ||||||||||||||||||    
T  33057728 aaattgttcaatttataggggattatataagaaattcatagggatttacataagaaattg 33057669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 29238214 - 29238154
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    ||||| |||||||| ||| | |||||||||||||||||||| |||||||| ||||||||||    
T  29238214 aaattttccaatttttaggggtttatataagaaattcatagggatttacacaagaaattgc 29238154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 6271188 - 6271296
Alignment:
Q  31 aaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaag 130  Q
    |||||| | ||||||||  ||||||||| || |||||||| ||  |||| || |||||||||||||||  || |||||||| |||  | || ||||||||    
T  6271188 aaactaacagaaaggaccgaaactagtaacggagcaaaacttaaaggacgaatttggtacaaattatatttaggggaccaatttggtagaaacaattaag 6271287  T
Q  131 ttaagggac 139  Q
    |||||||||    
T  6271288 ttaagggac 6271296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 9770716 - 9770776
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    ||||||||||||| |||| | |||||||||||||||||    |||||||||||||||||||    
T  9770716 aaattgtccaattcatagtggtttatataagaaattcaggatgatttacataagaaattgc 9770776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 15017830 - 15017890
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||||||||||||    ||||||||||||||||| ||  ||||||||||||||||||    
T  15017830 aaattgtccaatttatacgcgtttatataagaaattcagaggaatttacataagaaattgc 15017890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 17303185 - 17303125
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| |||||||| |  | ||||||||||||||||||||  ||||||||||||||||||    
T  17303185 aaattgcccaatttacaagggtttatataagaaattcataggaatttacataagaaattgc 17303125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 24320510 - 24320450
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | |||||||||||||||| |||  ||||||| ||||||||||    
T  24320510 aaattgcccaatttataggggtttatataagaaattcgtaggaatttacacaagaaattgc 24320450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 38408153 - 38408229
Alignment:
Q  63 agcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggac 139  Q
    |||||||| ||  |||| || |||||||||||||||  || |||||||| |||| |||| |||||||||||||||||    
T  38408153 agcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttgatacaaacaattaagttaagggac 38408229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 41986058 - 41986108
Alignment:
Q  41 aaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtaca 91  Q
    |||||||||||| ||| | || ||||||||||| |||||||||||||||||    
T  41986058 aaaggactaaaattagcaacggagcaaaacataggggaccaaattggtaca 41986108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 10334235 - 10334295
Alignment:
Q  159 aaattgtccaatttatagaga-tttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| |||||||||| ||| ||||||||||||||||| ||  ||||||||||||||||||    
T  10334235 aaattgcccaatttata-agagtttatataagaaattcagaggaatttacataagaaattgc 10334295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 162
Target Start/End: Original strand, 24798843 - 24798974
Alignment:
Q  31 aaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaag 130  Q
    |||||||  ||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| || |||| |||||| ||||||||||||||     
T  24798843 aaactactagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggggatcaaattaagacaatcaattaat 24798942  T
Q  131 ttaagggaccaggtgattgaataagtctaaat 162  Q
    |||||||| | |||||||||||||| ||||||    
T  24798943 ttaagggatcgggtgattgaataagcctaaat 24798974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 2216813 - 2216923
Alignment:
Q  45 gactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggaccaggt 144  Q
    ||||||||||| || | |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | |    
T  2216813 gactaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggat 2216912  T
Q  145 gattgaataag 155  Q
    |||||||||||    
T  2216913 gattgaataag 2216923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 18494862 - 18494736
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| |  |||||||||||||||||| | ||||||| |||| ||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  18494862 agagaaactaacaaaaaggactaaaactagtaacaaagcaaa-cataggggaccaaaatggtacaaattatagcta-gggaccaaattgagacaatcaat 18494765  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
     |||||||||||||| |||||||||||||    
T  18494764 aaagttaagggaccatgtgattgaataag 18494736  T

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Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 11643879 - 11643754
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | || |||||||||||||||| | || ||||||||| || ||||||||| |||||||||||| || |||| ||||||||||||||||||    
T  11643879 agagaaactaacagagaggactaaaactagtaacaaaacaaaacatagggaaccaaattgatacaaattatagttaggggatcaaattgagacaatcaat 11643780  T
Q  127 taagttaagggaccaggtgattgaat 152  Q
    ||| |||||||||| |||||||||||    
T  11643779 taaattaagggaccgggtgattgaat 11643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 24798755 - 24798642
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | |||| |||||||||||||| ||||||||||||||  ||||||||||||||||||||||||  | ||||||||||||| |||| ||||    
T  24798755 agagaaactaacagaaatgactaaaactagtaacgaagcaaaacatagaggaccaaattggtacaaattatagtcaggggaccaaattgaaacaaccaat 24798656  T
Q  127 taagttaagggacc 140  Q
    ||||||||||||||    
T  24798655 taagttaagggacc 24798642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 161
Target Start/End: Original strand, 11643979 - 11644099
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatggg-accaaattgagacaatcaattaagttaaggga 138  Q
    |||| |||||||||||||| | ||| |||||||| |||||||||||| |||||||||||| || ||| ||||||||||||||||||||||||||||||||    
T  11643979 gaaaagactaaaactagtaacaaag-aaaacata-gggaccaaattgatacaaattatagttagggggaccaaattgagacaatcaattaagttaaggga 11644076  T
Q  139 ccaggtgattgaataagtctaaa 161  Q
    || |||||||||||||| |||||    
T  11644077 ccgggtgattgaataagcctaaa 11644099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 24690449 - 24690357
Alignment:
Q  63 agcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggaccaggtgattgaataag 155  Q
    |||||||||||  ||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  24690449 agcaaaacatagaggaccaaattggtacaaattatagtaaggggaccaaattgagacaatcaattaagttaagagaccgggtgattgaataag 24690357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 18494949 - 18495077
Alignment:
Q  27 agagaaactacccgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaat 126  Q
    |||||||||| | ||||| |||||||||| || || | ||||| ||| |||||||||||| |||||||||||| || |||| |||||| | | |||||||    
T  18494949 agagaaactaacagaaagaactaaaactaataacggatcaaaatataggggaccaaattgatacaaattatagttaagggatcaaattaatataatcaat 18495048  T
Q  127 taagttaagggaccaggtgattgaataag 155  Q
    ||||||||||||| || ||||||||||||    
T  18495049 taagttaagggactagatgattgaataag 18495077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 24690611 - 24690694
Alignment:
Q  75 gggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggaccaggtgattgaataagtct 158  Q
    ||||||||||||||||||||||||| || || |||||||| | ||||||||||||||||||||| | |||||||||||||||||    
T  24690611 gggaccaaattggtacaaattatagttagggaaccaaattaaaacaatcaattaagttaagggatcgggtgattgaataagtct 24690694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 9231925 - 9231865
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||    
T  9231925 aaattgcccaatttataggggtttatataagaaattcatagagatttacacaagaaattgc 9231865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 14309869 - 14309809
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||||| ||||||||||    
T  14309869 aaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaattgc 14309809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 1727996 - 1727944
Alignment:
Q  167 caatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  1727996 caatttataggggtttatataagaaattcatagggatttacacaagaaattgc 1727944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 13627605 - 13627657
Alignment:
Q  167 caatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||||| | |||||||||||||||||||| |||||||| ||||||||||    
T  13627605 caatttataggggtttatataagaaattcatagggatttacacaagaaattgc 13627657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 24694722 - 24694662
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| |||||||||||   |||||||||||||||||||| |||||||| ||||||||||    
T  24694722 aaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattgc 24694662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 27863756 - 27863812
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaa 215  Q
    |||||||||||||||||  | ||||||||||||||||| ||| ||||||||||||||    
T  27863756 aaattgtccaatttataagggtttatataagaaattcagagaaatttacataagaaa 27863812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 11643949 - 11643898
Alignment:
Q  40 gaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtaca 91  Q
    |||| |||||||||||||| || ||||||||||| |||||||||||||||||    
T  11643949 gaaatgactaaaactagtaacggagcaaaacataggggaccaaattggtaca 11643898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 24798769 - 24798822
Alignment:
Q  39 cgaaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaa 92  Q
    |||||||||||||||||| | || ||||||||||| |||||||||||| |||||    
T  24798769 cgaaaggactaaaactaggaacggagcaaaacataggggaccaaattgatacaa 24798822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 13103189 - 13103129
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| |||||||||| || ||||||||||||||||| ||  |||||||||| |||||||    
T  13103189 aaattgcccaatttataaaggtttatataagaaattcagaggaatttacataaaaaattgc 13103129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 28750721 - 28750661
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | ||||||||||||||||| |   ||||||||||||||||||    
T  28750721 aaattgcccaatttataggggtttatataagaaattcagaagaatttacataagaaattgc 28750661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 9955643 - 9955698
Alignment:
Q  84 ttggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggac 139  Q
    |||||||||||||||  || |||||||| |||| |||| |||||||||||||||||    
T  9955643 ttggtacaaattatatttaggggaccaatttgatacaaacaattaagttaagggac 9955698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 9954923 - 9954825
Alignment:
Q  41 aaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggac 139  Q
    |||||||  ||||| ||| || |||||||| ||  |||| || |||||||||||||||  || |||||||| |||  |||| |||||||||||||||||    
T  9954923 aaaggaccgaaactggtaacggagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaagggac 9954825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 24497645 - 24497585
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||| ||||||||||| | ||||||||||||||||| ||  ||||||| || |||||||    
T  24497645 aaattgcccaatttataggggtttatataagaaattcagaggaatttacacaaaaaattgc 24497585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 5270 - 5380
Alignment:
Q  45 gactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattatagatatgggaccaaattgagacaatcaattaagttaagggaccaggt 144  Q
    ||||||||||| || | |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | |    
T  5270 gactaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggat 5369  T
Q  145 gattgaataag 155  Q
    |||||||||||    
T  5370 gattgaataag 5380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 20902 - 20842
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    |||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||    
T  20902 aaattgtccaatttatagagctttatataagaaattcagaggaatttacataagaaattgc 20842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 54576 - 54690
Alignment:
Q  159 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcnnnnnnnttgggccggagtccaagcgaatgcctggggtc 258  Q
    |||||||||||||||||| ||||||||||| ||||||||||  ||||||| || |||||||       |||| ||||| |||  ||||||||| ||||||    
T  54576 aaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaaaattggcccggaatccgggcgaatgcccggggtc 54675  T
Q  259 gcctggccatagaac 273  Q
    ||| |||| ||||||    
T  54676 gccgggccttagaac 54690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 34519 - 34463
Alignment:
Q  163 tgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgc 219  Q
    ||||||||||||||||||||||||||  |||||| || |||||||||||||||||||    
T  34519 tgtccaatttatagagatttatataaagaattcagagggatttacataagaaattgc 34463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 108111 - 108055
Alignment:
Q  41 aaaggactaaaactagtatcgaagcaaaacatacgggaccaaattggtacaaattat 97  Q
    ||||||||||||||||||  | ||||||||| |  ||||||||||| ||||||||||    
T  108111 aaaggactaaaactagtaatggagcaaaacacagaggaccaaattgatacaaattat 108055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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