View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4055_low_15 (Length: 249)

Name: NF4055_low_15
Description: NF4055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4055_low_15
NF4055_low_15
[»] chr1 (7 HSPs)
chr1 (1-103)||(47920030-47920132)
chr1 (140-230)||(47919898-47919983)
chr1 (16-90)||(47911205-47911279)
chr1 (19-68)||(47925288-47925337)
chr1 (25-90)||(47904146-47904211)
chr1 (180-230)||(47903986-47904036)
chr1 (194-230)||(47925128-47925164)


Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 47920132 - 47920030
Alignment:
Q  1 agagagagagtgagccatggcactgcagagtagcttctccatacatgatggaaaatacgatgatgatggtctcataaaacgaacaggttttcatcttgac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47920132 agagagagagtgagccatggcactgcagagtagcttctccatacatgatgaaaaatatgatgatgatggtctcataaaacgaacaggttttcatcttgac 47920033  T
Q  101 atg 103  Q
    |||    
T  47920032 atg 47920030  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 47919983 - 47919898
Alignment:
Q  140 gtcaagtaatctagttacttagcttgttattttaacatggataattttatgtgcatgaaggatcatgggtaactgcgagtgcacacatagt 230  Q
    ||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47919983 gtcaagtaatctagttactt-----gttattttaacatggataattttatgtgcatgaaggatcatgggtaactgcgagtgcacacatagt 47919898  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 47911279 - 47911205
Alignment:
Q  16 catggcactgcagagtagcttctccatacatgatggaaaatacgatgatgatggtctcataaaacgaacaggttt 90  Q
    ||||||| ||||||||||||| |||||  ||  || |||||| ||||||||||||| ||||||||||||||||||    
T  47911279 catggcagtgcagagtagcttatccattgatagtgtaaaatatgatgatgatggtcacataaaacgaacaggttt 47911205  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 47925337 - 47925288
Alignment:
Q  19 ggcactgcagagtagcttctccatacatgatggaaaatacgatgatgatg 68  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||||||    
T  47925337 ggcactgcagagtagcttctccatggatgatggaagatacgatgatgatg 47925288  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 47904211 - 47904146
Alignment:
Q  25 gcagagtagcttctccatacatgatggaaaatacgatgatgatggtctcataaaacgaacaggttt 90  Q
    ||||||||| || |||||| | |||||||| || ||||||||||||| ||| ||||||||||||||    
T  47904211 gcagagtagtttttccatagaagatggaaagtatgatgatgatggtcgcatgaaacgaacaggttt 47904146  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 47904036 - 47903986
Alignment:
Q  180 ataattttatgtgcatgaaggatcatgggtaactgcgagtgcacacatagt 230  Q
    |||||| ||||||||||||||| ||||| | ||| ||||||||||||||||    
T  47904036 ataattgtatgtgcatgaaggaacatggttcacttcgagtgcacacatagt 47903986  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 47925164 - 47925128
Alignment:
Q  194 atgaaggatcatgggtaactgcgagtgcacacatagt 230  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  47925164 atgaaggaacatggataactgcgagtgcacacatagt 47925128  T

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