View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4055_low_18 (Length: 227)
Name: NF4055_low_18
Description: NF4055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4055_low_18 |
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| [»] scaffold1243 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 32799284 - 32799495
Alignment:
| Q |
1 |
tagacacctttaacggaacatgtttcaaccaggcagcatcgaaaaggccagtctctgtaggtatggccgacat--cgtgaggtactgataagtccccata |
98 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| || |
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| T |
32799284 |
tagacacctttaacggaacatgtttcaaccaggcagtatcgaaaaggcctgtctctataggtatggccgacatatcgtgaggtactgataagtcccctta |
32799383 |
T |
|
| Q |
99 |
acggtataaccactaat-aggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataaggacgagtattccacaacg |
197 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32799384 |
acggtataaccactaattaggatcaataatccaacgccacctatcaagagtagaatcctgcaaaagaacattacacaataaggacgagcattccacaacg |
32799483 |
T |
|
| Q |
198 |
gaatcctcttcc |
209 |
Q |
| |
|
|||||||||||| |
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|
| T |
32799484 |
gaatcctcttcc |
32799495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 32711087 - 32710887
Alignment:
| Q |
9 |
tttaacggaacatgtttcaaccaggcagcatcgaaaaggccagtctctgtaggtatggccgacatcgtgaggtactgataagtccccataacggtataac |
108 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |||| ||||||| |
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| T |
32711087 |
tttaacggaacatgtttcaaccaagcagcatcgaaaaggccagtctctgtaggtgtgtcagacatcgtgaggtactgataagtccccttaaccgtataac |
32710988 |
T |
|
| Q |
109 |
cactaataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataaggacgagtattccacaacggaatcctcttc |
208 |
Q |
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| ||||||||||||||||||||| | ||| |||||||| ||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
32710987 |
cgctaataggatcaagaatccaaagctacctgtcaagagtggaatcctgcaaaacaacattacacaacaaggacgagcattccacaacggaatcctcttc |
32710888 |
T |
|
| Q |
209 |
c |
209 |
Q |
| |
|
| |
|
|
| T |
32710887 |
c |
32710887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 15175285 - 15175182
Alignment:
| Q |
81 |
tactgataagtccccataacggtataaccactaataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataagg |
180 |
Q |
| |
|
|||||||||||| || |||||| ||||| |||||||||||||||| ||| | ||||| | |||||||||||||||||||| || || |||||| |||| |
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| T |
15175285 |
tactgataagtctccttaacggagtaaccgctaataggatcaagaacccaccgccacctgttaagagtagaatcctgcaaaacaatatcacacaacaagg |
15175186 |
T |
|
| Q |
181 |
acga |
184 |
Q |
| |
|
|||| |
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|
| T |
15175185 |
acga |
15175182 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 21829949 - 21829746
Alignment:
| Q |
6 |
acctttaacggaacatgtttcaaccaggcagcatcgaaaaggccagtctctgtaggtatggccgacatcgtgaggtactgataagtccccataacggtat |
105 |
Q |
| |
|
|||||||||||||||||||||||||| || || || ||||| | ||||| | | | || | | |||||| || ||||||||||| ||| |||||| || |
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| T |
21829949 |
acctttaacggaacatgtttcaaccaagctgcgtcaaaaagacatgtctccattgatgtgtcgggcatcgtaagatactgataagtacccttaacggaat |
21829850 |
T |
|
| Q |
106 |
aaccactaataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataaggacgagtattccacaacggaatcctc |
205 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| ||||||| |||||||||||||| |||||||||||| ||||||| | | |||| ||| ||||||| |
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|
| T |
21829849 |
aaccattaataggatcaagaatccaccaccacctgtcaagagaagaatcctgcaaaacaacattacacaacaaggacgggcactccataacagaatcctt |
21829750 |
T |
|
| Q |
206 |
ttcc |
209 |
Q |
| |
|
|||| |
|
|
| T |
21829749 |
ttcc |
21829746 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 184
Target Start/End: Original strand, 9600825 - 9601006
Alignment:
| Q |
3 |
gacacctttaacggaacatgtttcaaccaggcagcatcgaaaaggccagtctctgtaggtatggccgacatcgtgaggtactgataagtccccataacgg |
102 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||| |||||||||||||| | || | ||||||||||| || |||||||||||| ||| || |
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|
| T |
9600825 |
gacacctttaacggaacctgtttcaaccaagctgcatgaaaaaggccagtctccaataatgtgtcagacatcgtgagatattgataagtccccttaatgg |
9600924 |
T |
|
| Q |
103 |
tataaccactaataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataaggacga |
184 |
Q |
| |
|
||||||| |||||||||||||| ||||| | ||||| |||||||||||||||| ||||| ||||| ||||| |||||||| |
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|
| T |
9600925 |
tataaccgctaataggatcaaggatccaccgccacctgtcaagagtagaatcctacaaaacaacataacacaccaaggacga |
9601006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 184
Target Start/End: Original strand, 9828396 - 9828577
Alignment:
| Q |
3 |
gacacctttaacggaacatgtttcaaccaggcagcatcgaaaaggccagtctctgtaggtatggccgacatcgtgaggtactgataagtccccataacgg |
102 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||| |||||||||||||| | || | ||||||||||| || |||||||||||| ||| || |
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|
| T |
9828396 |
gacacctttaacggaacctgtttcaaccaagctgcatgaaaaaggccagtctccaataatgtgtcagacatcgtgagatattgataagtccccttaatgg |
9828495 |
T |
|
| Q |
103 |
tataaccactaataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataaggacga |
184 |
Q |
| |
|
||||||| |||||||||||||| ||||| | ||||| |||||||||||||||| ||||| ||||| ||||| |||||||| |
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|
| T |
9828496 |
tataaccgctaataggatcaaggatccaccgccacctgtcaagagtagaatcctacaaaacaacataacacaccaaggacga |
9828577 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 209
Target Start/End: Original strand, 30187932 - 30188060
Alignment:
| Q |
81 |
tactgataagtccccataacggtataaccactaataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataagg |
180 |
Q |
| |
|
||||||||||||||| |||||| ||||||| ||||||||||||||||||| | ||||| ||| | || |||||||||| | ||||||| |||| |||| |
|
|
| T |
30187932 |
tactgataagtccccttaacggaataaccattaataggatcaagaatccaccgccacctgtcagaaataaaatcctgcaagacaacattagacaacaagg |
30188031 |
T |
|
| Q |
181 |
acgagtattccacaacggaatcctcttcc |
209 |
Q |
| |
|
|||| | |||| ||||| ||||||||| |
|
|
| T |
30188032 |
acgaacactccatgacggagtcctcttcc |
30188060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 14092160 - 14092056
Alignment:
| Q |
71 |
catcgtgaggtactgataagtccccataacggtataaccactaataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacatta |
170 |
Q |
| |
|
|||||| || ||||| ||||||||| |||||| ||||||| || || |||||||||||| | ||| | |||| | ||||||||||||| | ||||||| |
|
|
| T |
14092160 |
catcgtaagatactggtaagtccccttaacggaataaccattagtacaatcaagaatccaccgccatctgtcaaaaatagaatcctgcaagacaacatta |
14092061 |
T |
|
| Q |
171 |
cacaa |
175 |
Q |
| |
|
|||| |
|
|
| T |
14092060 |
gacaa |
14092056 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1243 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1243
Description:
Target: scaffold1243; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 180
Target Start/End: Complemental strand, 1444 - 1345
Alignment:
| Q |
81 |
tactgataagtccccataacggtataaccactaataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataagg |
180 |
Q |
| |
|
||||||||||||||| |||||| ||||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||| || || |||||| |||| |
|
|
| T |
1444 |
tactgataagtccccttaacggagtaaccgttaataggatcaagaatccaccgccacctatcaagaacatgatcctgcaaaataatatgacacaacaagg |
1345 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 15160836 - 15160939
Alignment:
| Q |
81 |
tactgataagtccccataacggtataaccactaataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataagg |
180 |
Q |
| |
|
||||||||||||||| |||||| |||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||| || || |||||| | || |
|
|
| T |
15160836 |
tactgataagtccccttaacggagtaacagttaataggatcaagaatccaccgccacctatcaagaacatgatcctgcaaaataatatgacacaacaggg |
15160935 |
T |
|
| Q |
181 |
acga |
184 |
Q |
| |
|
|||| |
|
|
| T |
15160936 |
acga |
15160939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 15184425 - 15184490
Alignment:
| Q |
81 |
tactgataagtccccataacggtataaccactaataggatcaagaatccaacaccaccaatcaaga |
146 |
Q |
| |
|
||||||||||||||| ||| || ||||| ||||||||||||||||||| | ||||| ||||||| |
|
|
| T |
15184425 |
tactgataagtccccttaatggagtaaccgttaataggatcaagaatccaccgccacctatcaaga |
15184490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 15170876 - 15170948
Alignment:
| Q |
112 |
taataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataaggacga |
184 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||| | ||||||||||| || || |||||| |||||||| |
|
|
| T |
15170876 |
taataggatcaaaaatccaccaccacctatcaagaacatgatcctgcaaaataatatgacacaacaaggacga |
15170948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 15179648 - 15179720
Alignment:
| Q |
112 |
taataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataaggacga |
184 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||| | ||||||||||| || || |||||| |||||||| |
|
|
| T |
15179648 |
taataggatcaaaaatccaccaccacctatcaagaacatgatcctgcaaaataatatgacacaacaaggacga |
15179720 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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