View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4055_low_2 (Length: 496)
Name: NF4055_low_2
Description: NF4055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4055_low_2 |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 211 - 468
Target Start/End: Complemental strand, 20835398 - 20835139
Alignment:
| Q |
211 |
gatgtttcttgtgcattagttatattaaatgatttatttaagcgaccttttaggataggagcgtgaaatattttatgcttttgccctacatattatttta |
310 |
Q |
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| T |
20835398 |
gatgtttcttgtgcattagttat--taaatgatttatttaagtgaccttttaggataggagcgtgaaatattttatgcttttgcgctacatattatttta |
20835301 |
T |
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| Q |
311 |
acctccttgatttaattaatatgagtattagccaaataattagtctttaaaatttgactatgaccaaggtactacccata---gcaggaatacactactt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||| ||| |||||||| |
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| T |
20835300 |
acctccttgatttaattaatatgagtattagccaaataattagtctttgaaatttgactatgaccaaggcactacccatagcagcagcaatgcactactt |
20835201 |
T |
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| Q |
408 |
tatgttctccctttatttaattaaaaatattttat-agtaatggagtagggaatgatcttgt |
468 |
Q |
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| T |
20835200 |
tatgttctccctttatttaattaaaaatattttataagtaatggagtagggaatgatcttgt |
20835139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 20742156 - 20742240
Alignment:
| Q |
10 |
attattctgatgttgaaaaagtgcaggtggcagccattgaatttaaggagtatgctctaatatggtgggatcaaatggtcaaaga |
94 |
Q |
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|||| ||| ||||||||||||||||||| || ||||||| || || |||||| || || |||||||| ||||| || ||||||| |
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| T |
20742156 |
attactctaatgttgaaaaagtgcaggttgcttccattgagttcaaagagtatactttagtatggtggtatcaattgatcaaaga |
20742240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 18782531 - 18782417
Alignment:
| Q |
9 |
gattattctgatgttgaaaaagtgcaggtggcagccattgaatttaaggagtatgctctaatatggtgggatcaaatggtcaaagacaaggtgaggtata |
108 |
Q |
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| T |
18782531 |
gattattctgatgttgaaaaagtgcaggtagcaaccattgaatttaaggagtatgctctaatatggtgggatcaaatggtcaaagacaaggtgaggtata |
18782432 |
T |
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| Q |
109 |
atgaatcacccattg |
123 |
Q |
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| T |
18782431 |
atgaaccacccattg |
18782417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 11470800 - 11470914
Alignment:
| Q |
9 |
gattattctgatgttgaaaaagtgcaggtggcagccattgaatttaaggagtatgctctaatatggtgggatcaaatggtcaaagacaaggtgaggtata |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11470800 |
gattattctgatgttgaaaaagtgcaggtggcagccattgaatttaaggagtttgctctaatatggtgggatcaaatggtcaaagacaaggtgaggtata |
11470899 |
T |
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| Q |
109 |
atgaatcacccattg |
123 |
Q |
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||||| |||| |||| |
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| T |
11470900 |
atgaaccaccgattg |
11470914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 211 - 324
Target Start/End: Original strand, 3427231 - 3427342
Alignment:
| Q |
211 |
gatgtttcttgtgcattagttatattaaatgatttatttaagcgaccttttaggataggagcgtgaaatattttatgcttttgccctacatattatttta |
310 |
Q |
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||||||||||||||||||||||| |||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||| |||| |||||| |
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| T |
3427231 |
gatgtttcttgtgcattagttat--taaatggtttatttaagtgaccttttatgataggagcgtgaaatattttatgcttttgcgctatatatcatttta |
3427328 |
T |
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| Q |
311 |
acctccttgattta |
324 |
Q |
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| T |
3427329 |
acctccttgattta |
3427342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 30750 - 30634
Alignment:
| Q |
9 |
gattattctgatgttgaaaaagtgcaggtggcagccattgaatttaaggagtatgctctaatatggtgggatcaaatggtcaaagacaaggtgag--gta |
106 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
30750 |
gattattttgatgttgaaaaagtgcaggttgcagccattgaatttaaggagtatgctctaatatggtgggatcaaatggtcaaagagaaggtgaggtgta |
30651 |
T |
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| Q |
107 |
taatgaatcacccattg |
123 |
Q |
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| T |
30650 |
taatgaaccacccattg |
30634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 12367929 - 12367860
Alignment:
| Q |
25 |
aaaaagtgcaggtggcagccattgaatttaaggagtatgctctaatatggtgggatcaaatggtcaaaga |
94 |
Q |
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| T |
12367929 |
aaaaagtgcaggttgcagcccttgaatttaaggagtatgccctagtgtggtgagatcaaattgtcaaaga |
12367860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 24460793 - 24460875
Alignment:
| Q |
12 |
tattctgatgttgaaaaagtgcaggtggcagccattgaatttaaggagtatgctctaatatggtgggatcaaatggtcaaaga |
94 |
Q |
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| T |
24460793 |
tattctaatgttgaaaaagtgcaggtttcttccattgaattcaaggagtatgctctagtttagtggcatcaaacgatcaaaga |
24460875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 14577750 - 14577666
Alignment:
| Q |
10 |
attattctgatgttgaaaaagtgcaggtggcagccattgaatttaaggagtatgctctaatatggtgggatcaaatggtcaaaga |
94 |
Q |
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||||||||||| |||||||||||||| | || ||||||| || || || |||||| || | |||||||||||| || ||||||| |
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| T |
14577750 |
attattctgatcttgaaaaagtgcagattgcttccattgagttcaaagaatatgctttagtgtggtgggatcaagtgatcaaaga |
14577666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 16021674 - 16021600
Alignment:
| Q |
20 |
tgttgaaaaagtgcaggtggcagccattgaatttaaggagtatgctctaatatggtgggatcaaatggtcaaaga |
94 |
Q |
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||||||||| |||||||| || ||||||| || |||||||||||| || |||||||||||||| || ||||||| |
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| T |
16021674 |
tgttgaaaaggtgcaggttgcttccattgagttcaaggagtatgctttagtatggtgggatcaattgatcaaaga |
16021600 |
T |
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