View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4055_low_3 (Length: 471)
Name: NF4055_low_3
Description: NF4055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4055_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 11 - 455
Target Start/End: Original strand, 12268291 - 12268735
Alignment:
| Q |
11 |
cataggtggatatgaaatacctataaagactaatttaatattaaatgcatgggcaattggtagagatccaaatcattggtctgatgcagagaagtttata |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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|
| T |
12268291 |
cataggaggatatgaaatacctataaagactaatttaatattaaatgcatgggcaattggaagagatcccaatcattggtctgatgcagagaagtttata |
12268390 |
T |
|
| Q |
111 |
cctgagaggtttcatgataatactggttttgattttaataaagtgaatgataatagctttcagtacattccttttggaggaggaagaagaatgtgtccag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
12268391 |
cctgagaggtttcatgataatactggttttgattttaataaagtgaatgataatagctttcagtacatcccttttggaggaggaagaagaatgtgtccag |
12268490 |
T |
|
| Q |
211 |
gagttttgtttggtttagcaaatattgagcttcctctggctgccttactttaccacttcgactggaaaattcctaatgaaatgaaagtagaagactttga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
12268491 |
gagttttgtttggtttagcaaatattgagcttcctctggctgccttactttaccacttcgactggaaaattcctaatgaaatgaaagcagaagactttga |
12268590 |
T |
|
| Q |
311 |
tatgacagaagaatatggagctacggtgactaggaaaaacaacctgtttttgattcctactccatatatttgattatttccataaaaatccattgtcaac |
410 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12268591 |
tatgactgaagaatatggagctacggtgtctaggaaaaacaacctgtttttgattccaactccatatatttgattatttccataaaaatccattgtcaac |
12268690 |
T |
|
| Q |
411 |
acatgtaaccaagacaaggtttactttcaataattatatcaaata |
455 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
12268691 |
acatgtaaccaagacaagatttactttcaataattatatcaaata |
12268735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 386
Target Start/End: Complemental strand, 12425394 - 12425019
Alignment:
| Q |
11 |
cataggtggatatgaaatacctataaagactaatttaatattaaatgcatgggcaattggtagagatccaaatcattggtctgatgcagagaagtttata |
110 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||||||| | |||||||||||||| |||||||||||| |
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|
| T |
12425394 |
cataggtggatatgaaatacctttaaaaactaacttaatattaaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttata |
12425295 |
T |
|
| Q |
111 |
cctgagaggtttcatgataatactggttttgattttaataaagtgaatgataatagctttcagtacattccttttggaggaggaagaagaatgtgtccag |
210 |
Q |
| |
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|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
12425294 |
ccggagaggtttcatgatagtactggttttgattttaataaagtgaatgataatagctttcagtatttcccttttggaggaggaagaagaatgtgtccag |
12425195 |
T |
|
| Q |
211 |
gagttttgtttggtttagcaaatattgagcttcctctggctgccttactttaccacttcgactggaaaattcctaatgaaatgaaagtagaagactttga |
310 |
Q |
| |
|
|| |||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || |
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|
| T |
12425194 |
gaattttgtttggcttggcaaatattgagcttcctctggctgcattactttaccacttcgactggaaaattcctaatgaaatgaaagaagaggacttaga |
12425095 |
T |
|
| Q |
311 |
tatgacagaagaatatggagctacggtgactaggaaaaacaacctgtttttgattcctactccatatatttgatta |
386 |
Q |
| |
|
|||||| |||| | ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
12425094 |
tatgactgaagtctttggagctacggtgtctaggaaaaacaacctgtttttgattccaactcagtatatttgatta |
12425019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 55958623 - 55958240
Alignment:
| Q |
11 |
cataggtggatatgaaatacctataaagactaatttaatattaaatgcatgggcaattggtagagatccaaatcattggtctgatgcagagaagtttata |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | || ||||||| |||||||| | |||||||| || |||||| ||||||||||||||||||| |
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|
| T |
55958623 |
cataggtggatatgaaataccaataaagactaatgtgttagtaaatgcttgggcaatgtgaagagatcccaaatattggtatgatgcagagaagtttata |
55958524 |
T |
|
| Q |
111 |
cctgagaggtttcatgataatactggttttgattttaataaagtgaatg------ataatagctttcagtacattccttttggaggaggaagaagaatgt |
204 |
Q |
| |
|
||||||||||||||||| | || |||||||||||||||||||||| |||||| |||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
55958523 |
cctgagaggtttcatgacagtaaatattttgattttaataaagtgaatagtaataataataactttgaatacatcccttttggaggaggaagaagaatgt |
55958424 |
T |
|
| Q |
205 |
gtccaggagttttgtttggtttagcaaatattgagcttcctctggctgccttactttaccacttcgactggaaaattcctaatgaaatgaaagtagaaga |
304 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||||||||||||||| ||||| ||| | || |||||| | ||| || ||||||||| ||||||| ||| || |
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|
| T |
55958423 |
gtccaggaattttgtttggcttagctaatattgagcttcctcttgctgcattattgtatcacttcaattgggaacttcctaatggaatgaaaccagagga |
55958324 |
T |
|
| Q |
305 |
ctttgatatgacagaagaatatggagctacggtgactaggaaaaacaacctgtttttgattcctactccatatatttgattatt |
388 |
Q |
| |
|
||| |||||||| |||| | ||||||| ||| |||||| ||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
55958323 |
cttggatatgactgaagcctttggagctgttgtggctaggagaaacaacctgtatttgattccaactccatatatttgattatt |
55958240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 55955067 - 55954701
Alignment:
| Q |
11 |
cataggtggatatgaaatacctataaagactaatttaatattaaatgcatgggcaattggtagagatccaaatcattggtctgatgcagagaagtttata |
110 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| | ||| ||||||||||||||||||| |||||||| || ||||||| ||||||| ||||||||||| |
|
|
| T |
55955067 |
catagatggatatgaaataccaataaagactagcgtgatagtaaatgcatgggcaattggaagagatcccaaacattggtatgatgcaaagaagtttata |
55954968 |
T |
|
| Q |
111 |
cctgagaggtttcatgataatactggttttgattttaataaagtg---aatgataatagctttcagtacattccttttggaggaggaagaagaatgtgtc |
207 |
Q |
| |
|
||||| |||||| |||||| |||||||||||||||||||||| || ||| ||||||||||| | ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
55954967 |
cctgaaaggtttaatgatagtactggttttgattttaataaattgaacaataataatagctttgattacatgccttttgggggaggaagaagaatgtgtc |
55954868 |
T |
|
| Q |
208 |
caggagttttgtttggtttagcaaatattgagcttcctctggctgccttactttaccacttcgactggaaaattcctaatgaaatgaaagtagaagactt |
307 |
Q |
| |
|
| ||| ||| | |||| ||||| ||||||||||||||||||||||| || | || |||||| | ||| || ||||||||| ||||||| ||| ||||| |
|
|
| T |
55954867 |
cgggaatttcgcttggcttagctaatattgagcttcctctggctgcattgttgtatcacttcaattgggaacttcctaatggaatgaaaccagaggactt |
55954768 |
T |
|
| Q |
308 |
tgatatgacagaagaatatggagctacggtgactaggaaaaacaacctgtttttgattcctactcca |
374 |
Q |
| |
|
|||||||| |||| | ||||||| | | | |||||| ||| ||||| ||||||||| |||||| |
|
|
| T |
55954767 |
ggatatgactgaagcctttggagctgcagcggctaggagaaatggcctgtatttgattccaactcca |
55954701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 41795833 - 41795588
Alignment:
| Q |
11 |
cataggtggatatgaaatacctataaagactaatttaatattaaatgcatgggcaattggtagagatccaaatcattggtctgatgcagagaagtttata |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | ||| |||||||||||||||| || |||||||| || |||| | ||||||||| || |||||| |
|
|
| T |
41795833 |
cataggtggatatgaaatacctataaagactagtgtgatagtaaatgcatgggcaatcggaagagatcccaaatattgatatgatgcagataattttata |
41795734 |
T |
|
| Q |
111 |
cctgagaggtttcatgataatactggttttgattttaataaagtgaa---tgataatagctttcagtacattccttttggaggaggaagaagaatgtgtc |
207 |
Q |
| |
|
| | |||||||||| || | || | |||||| |||||||||||||| | |||||| |||| | ||||| |||| | | | ||||||||||||||||| |
|
|
| T |
41795733 |
cataagaggtttcaggacagtaaagattttgaatttaataaagtgaatagtaataataactttgaatacatcccttctagggaaggaagaagaatgtgtc |
41795634 |
T |
|
| Q |
208 |
caggagttttgtttggtttagcaaatattgagcttcctctggctgc |
253 |
Q |
| |
|
| ||| ||| | |||| ||||| || |||||||||||||| ||||| |
|
|
| T |
41795633 |
cgggaatttcgcttggcttagctaacattgagcttcctctagctgc |
41795588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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