View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4055_low_7 (Length: 328)
Name: NF4055_low_7
Description: NF4055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4055_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 4408980 - 4408666
Alignment:
| Q |
1 |
tgaagattttgacactgttatgttgtgttgtgtcatcatggcctatagtaacgtatagggttctatgtaatgaaatattgaagtataggtgtgtacnnnn |
100 |
Q |
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| T |
4408980 |
tgaagattttgacactgttatgttgtgttgtgtcatcatggcctatagtaacgtatagggttctatgtaatgaaatattgaagtataggtgtgtactttt |
4408881 |
T |
|
| Q |
101 |
nnnngttgcttttggggggtagta---gtaagaagagggtgattaaagtgtgtgatgtaagggatatataaaatgacgcaattttatgtatgaatggtca |
197 |
Q |
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| T |
4408880 |
ttt-gttgcttttggggggtagtaatagtaagaagagggtgattaaagtgtgtgatgtaagggatatataaaatgacgcaattttatatatgaatggtca |
4408782 |
T |
|
| Q |
198 |
tctcatcatctccatagttctgcaattttaatgcagcaaatcatgtgttcagtatttattcggcgggagggaacaatgcactttcatttcatatcaacac |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4408781 |
tctcatcatctccatagttctgcaattttaatgcagcaaatcatgtgttcagtatttattcggcgggagggaacaatgcactttcatttcatatcaacac |
4408682 |
T |
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| Q |
298 |
atactacttcagagtt |
313 |
Q |
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|||||||||||||||| |
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| T |
4408681 |
atactacttcagagtt |
4408666 |
T |
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