View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4055_low_8 (Length: 319)
Name: NF4055_low_8
Description: NF4055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4055_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 36214570 - 36214857
Alignment:
| Q |
14 |
ttctccatcatgtcaaaaaaccaagattgtgttttctactcaagctttacataacccaccggagttctgcaaatatgctattccttttggactcatgttt |
113 |
Q |
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| T |
36214570 |
ttctccatcatgtcaaaaaaccaagattgtgttttctactcaagctttacataacccaccggagttctgcaaatatgctattccttttggactcatgttt |
36214669 |
T |
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| Q |
114 |
tagtaaaactataatatctctttagtaaaataatgctgctttatttcattttaatcttcttttactaatttcaatcttcatacaatattgtgtagttttg |
213 |
Q |
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| T |
36214670 |
tggtaaa-ctataatatctctttagtaaaataatgctgctttatttcattttaatcttcttttactaatttcaatcttcatacaatattgtgtagttttg |
36214768 |
T |
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| Q |
214 |
gatggtggtcctctgagtttcttatattaattgtcgggctatgatctaatcatcaacttgaaacctcggttctttctatttcaatttat |
302 |
Q |
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| T |
36214769 |
gatggtggtcctctgagtttcttatattaattgtcgggctatgatctaatcatcaacttgaaacctcggttctttctatttcaatttat |
36214857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 184055 - 184328
Alignment:
| Q |
15 |
tctccatcatgtcaaaaaaccaagattgtgttttctactcaagctttacataacccaccggagttctgcaaatatgctattccttttggactcatgtttt |
114 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
184055 |
tctccatcatgtgaaaaaaccaagattgtgttttctactcatgctttacataacctaccagagttctgcaaatatgctattccttctggactcatgtttt |
184154 |
T |
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| Q |
115 |
agtaaaactataatatctctttagtaaaataatgctgctttatttcattttaatcttcttttactaatttcaatcttcatacaatattgtgtagttttgg |
214 |
Q |
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| T |
184155 |
ggtaaat-tataatatctcatta-taaaacaatgctgcttcatttcattttagttttcttctactaatttcaattttcatacaatattgtgtagttttga |
184252 |
T |
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| Q |
215 |
atggtggtcctctgagtttcttatattaattgtcgggctatgatctaatcatcaacttgaaacctcggttctttct |
290 |
Q |
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||||||||||| |||| ||||||| ||||||| |||||| | | |||||| ||||||||||||||||||||||||| |
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| T |
184253 |
atggtggtcctttgagattcttattttaattgccgggcttttacctaatcctcaacttgaaacctcggttctttct |
184328 |
T |
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