View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4056_high_1 (Length: 759)
Name: NF4056_high_1
Description: NF4056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4056_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 223 - 630
Target Start/End: Original strand, 13006674 - 13007080
Alignment:
| Q |
223 |
aacagagactagtcatcaacaaagttggcgaatactttacaccaataacaataacatagttaacaaaacaaaaatccatgcattagctttctaatccaca |
322 |
Q |
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| T |
13006674 |
aacagagactagtcatcaacaaagttggcgaatagtttacaccaataacaataacatagttaacaaaacaaaaatccatgcattagttttctaatccaca |
13006773 |
T |
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| Q |
323 |
agatatagtatatttgtttcttgtctcttataccacataatactgttatggcattggacgaactctcttgaaccgttacaatcagtaaatatagaatgaa |
422 |
Q |
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||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13006774 |
agaaatagtatatttgtttcttgtctcttataccacataacactgttatggcattggacgaactctcttgaac-gttacaatcagtaaatatagaatgaa |
13006872 |
T |
|
| Q |
423 |
aaattctagtaagcacaaagactaatatacaagatgagaaaaggaaggattagaagattgaaaacatttttataggcctctgtagtgatttaatatttgc |
522 |
Q |
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| T |
13006873 |
aaattctagtaagcacaaagactaatatacaagatgagaaaaggaaggattagaagattgaaaacatttttataggcctctgtagtgatttaatatttgc |
13006972 |
T |
|
| Q |
523 |
tttcttgaaagatggaaatgacagtgctttcatgatatacacaagaaggcttatgaacattttctttatctacacattacctctttcaagaaatgttatg |
622 |
Q |
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| T |
13006973 |
tttcttgaaagatggaaatgacagtgctttcatgatatacacaagaaggcttatgaacattttctttatctacacattacctctttcaagaaatgttatg |
13007072 |
T |
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| Q |
623 |
aactgata |
630 |
Q |
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|||||||| |
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| T |
13007073 |
aactgata |
13007080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 13006277 - 13006484
Alignment:
| Q |
16 |
agagcaacccatgcatcagcgttgaatatatggctcatagtttactgataagtggacatgttgctcgagtggacgcgtagtatttgaacacaaattgttc |
115 |
Q |
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| T |
13006277 |
agagcaacccatgcatcagcattgaatatatggctcatagtttactgataagtggacatgttgctcgagtggacgcgtagtatttgaacacaaattgttc |
13006376 |
T |
|
| Q |
116 |
tccgtaaccatataagcttgaataatagaaagatattgtagctgctcttcagtcggagacctaagcataattggctgaacttagtgatcaaatatcatgt |
215 |
Q |
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| T |
13006377 |
tccgtaaccatataagcttgaataatagaaagatattgtagctgctcttcagtcgaagacctaagcataattggctgaactttgtgatcaaatatcatgt |
13006476 |
T |
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| Q |
216 |
gttctcta |
223 |
Q |
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|||||||| |
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| T |
13006477 |
gttctcta |
13006484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 667 - 707
Target Start/End: Original strand, 13007117 - 13007157
Alignment:
| Q |
667 |
gttgatgatattagatcccattacactaatgataatatgcc |
707 |
Q |
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| T |
13007117 |
gttgatgatattagatcccattacactaatgataatatgcc |
13007157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 31280557 - 31280618
Alignment:
| Q |
128 |
taagcttgaataatagaaagatattgtagctgctcttcagtcggagacctaagcataattgg |
189 |
Q |
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|||||||| ||||||||||| ||||||||||||| | ||| ||||||||| |||||||||| |
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| T |
31280557 |
taagcttggataatagaaaggtattgtagctgctatgtagttggagacctaggcataattgg |
31280618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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