View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4056_low_3 (Length: 426)
Name: NF4056_low_3
Description: NF4056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4056_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 10690512 - 10690120
Alignment:
| Q |
1 |
attcttgagaccaattctctgcatggaaaaagtagcagcacctccaagttctcatggaatttcttccatggttaaaagaaagacaccatcagaacttagg |
100 |
Q |
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| T |
10690512 |
attcttgagaccaattctctgcatggaaaaagtagcagcacctccaagttctcatggaatttcttccatggttaaaagaaagacaccatcagaacttagg |
10690413 |
T |
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| Q |
101 |
ggagagcagttgaagcgggaaaatgttgaagacctcactgatgatgatg---atgaggtttctccctctgctggttccgcgaaagatacacaactaattg |
197 |
Q |
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| T |
10690412 |
ggagagcagttgaagcgggaaagtgttgaagacctcactgatgatgatgatgatgaggtttctccctctgctggttccgcgaaagatacacaactaattg |
10690313 |
T |
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| Q |
198 |
gtgaagtattttctgcgaaaaagtccatgtttagaattgtatctaaggagcaaactagtagtaatctaaagaatgatgccaaaggccaggctggtgaaac |
297 |
Q |
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| T |
10690312 |
gtgaagtattttctgcgaaaaagtccatgtttagaattgtatctaaggagcaaactagtagtaatctaaataa---------------------tgaaag |
10690234 |
T |
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| Q |
298 |
caatgaaaagttccttagtgttgctgacctttcatcatcagc---tgttggtagatcttctggaggagcagcagcagcaggtatcgacatgggacaagca |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || ||||||| ||||||||||||||| |
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| T |
10690233 |
caatgaaaagttccttagtgttgctgacctttcatcatcagctgttgttggtagatcttctggagcagcagcaacatcaggtattgacatgggacaagca |
10690134 |
T |
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