View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4057_low_1 (Length: 443)
Name: NF4057_low_1
Description: NF4057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4057_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 44969139 - 44968706
Alignment:
| Q |
1 |
taccaatgaaatccaaatagacaaacagagaaatgacatagaaaaagtgaaagggtaataaaaataataatgagtataatgtgaagatgtaaattaccaa |
100 |
Q |
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| T |
44969139 |
taccaatgaaatccaaatagacaaacagagaaatgacatagaaaaagtgaaagggtaataaaaataataatgagtataatgtgaagatgtaaattaccaa |
44969040 |
T |
|
| Q |
101 |
gtcgaggacatgaatgagagctttaatccgattttcatccaatttatggatattatcctctacccatttgccaagaaccaagtccagttccagaaacccg |
200 |
Q |
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| T |
44969039 |
gtcgaggacatgaatgagagctttaatccgattttcatccaatttatggatattatcctctacccatttgccaagaaccaagtccagttccagaaacccg |
44968940 |
T |
|
| Q |
201 |
cgttgtttgcttctatataataacctatggagcattgagaaatcaaacaaataaagaacgttaagcccaatcaaaatggggnnnnnnnnnnnnnnnngag |
300 |
Q |
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| T |
44968939 |
cgttgtttgcttctatataataacctatggagcattgagaaatcaaacaaataaagaacgttaagcccaatcaaaatgggg-aaaaaaaattaaaaagag |
44968841 |
T |
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| Q |
301 |
gagaacctgttaaataagcgccttttggattcttcgttagataaatcaatagctacgggtgattgagattgggatgtgaaaggggcaaaaagaggcctga |
400 |
Q |
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| T |
44968840 |
gagaacctgttaaataagcgccttttggattcttcgttagataaattaataactacgggtgattgagattgggacgtgaaaggggcaaaaggaggcctga |
44968741 |
T |
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| Q |
401 |
aatggagaaagggttttgtggaagaagtgatgatg |
435 |
Q |
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| T |
44968740 |
aatggagaaagggttttgtggaagaagtgatgatg |
44968706 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 40071384 - 40071303
Alignment:
| Q |
147 |
tggatattatcctctacccatttgccaagaaccaagtccagttccagaaacccgcgttgtttgcttctatataataacctat |
228 |
Q |
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| T |
40071384 |
tggatattgttctgtacccattttccaagaaccagatcgagttcgagaaaccctcgttgcttgcttctatacaataacctat |
40071303 |
T |
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