View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4058_high_3 (Length: 338)
Name: NF4058_high_3
Description: NF4058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4058_high_3 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 6490278 - 6490603
Alignment:
| Q |
13 |
catcatgacattgcttacagaatcgagccactctccgtttaactttcaataagccttcagtatgtcttctttactaattaccatacaccatttggcacat |
112 |
Q |
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| T |
6490278 |
catcatgacattgcttacagaatcgagccactctccgtttaactttcaataagccttcagtatgtcttctatactaattaccatacaccatttggcacat |
6490377 |
T |
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| Q |
113 |
tttctttatatatgatcacaatgtcattcatgctgaatcattagagacaaaaggtagatgggttttctatgatttaagtaaggatctgcggtgaagttga |
212 |
Q |
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| T |
6490378 |
tttctttatatatgatcacaatgtcattcatgctgaatcattagagacaaaaggtagatgggttttctatgatttaagtaaggatctgcggtgaagttga |
6490477 |
T |
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| Q |
213 |
tttagtgaaccaaactgttttggctttgtggtgattatttttctggactctggagctagtttagtgtcttggaatttgtttgcagtaatgaattttaaca |
312 |
Q |
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| T |
6490478 |
tttagtgaaccaaactgttttggctttgtggtgattatttttctggactctggagctagtttagtgtcttggaatttgtttgcagtaatgaattttaaca |
6490577 |
T |
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| Q |
313 |
ccttgaagggaaatagaaaatgcttt |
338 |
Q |
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| T |
6490578 |
ccttgaagggaaatagaaaatgcttt |
6490603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 22 - 338
Target Start/End: Complemental strand, 38700394 - 38700078
Alignment:
| Q |
22 |
attgcttacagaatcgagccactctccgtttaactttcaataagccttcagtatgtcttctttactaattaccatacaccatttggcacattttctttat |
121 |
Q |
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| T |
38700394 |
attgcttacagaatcgagccactctccatttaactttcaataagtcttcagtatgtcttcttcactagttactatataccatttggcacattttctttat |
38700295 |
T |
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| Q |
122 |
atatgatcacaatgtcattcatgctgaatcattagagacaaaaggtagatgggttttctatgatttaagtaaggatctgcggtgaagttgatttagtgaa |
221 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| ||| |
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| T |
38700294 |
atatgatcacaatgttattcatgctgaatcattagaaacaaaaggtagatgggttttctatgatttaagtaaggatctgtggtgaaggttatttagagaa |
38700195 |
T |
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| Q |
222 |
ccaaactgttttggctttgtggtgattatttttctggactctggagctagtttagtgtcttggaatttgtttgcagtaatgaattttaacaccttgaagg |
321 |
Q |
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| T |
38700194 |
ccaaactgttgtggctttatggtgattatttttctggactctggagctagtttagtgtcttggaattgatttgcagtaatgaattttaacaccttgaagg |
38700095 |
T |
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| Q |
322 |
gaaatagaaaatgcttt |
338 |
Q |
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| T |
38700094 |
gaaatagaaaatgcttt |
38700078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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