View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4058_high_4 (Length: 338)
Name: NF4058_high_4
Description: NF4058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4058_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 32407880 - 32407547
Alignment:
| Q |
1 |
aaagttacaacaagaaggccaaactatgtcagaatgttctatcattaaccatatctcggtccagcttaataatttctatattttta-tactagtttgtcg |
99 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
32407880 |
aaagttacaacaagaaggccaaactaagtcagaatgttctatcattaaccatatctcggtctagcttaataatttctatattttttctactagtttgtcg |
32407781 |
T |
|
| Q |
100 |
tatagtttttcaaggattcctctacttctactgatgtaactatcctccatccaatttactcttcttactacatattttgtaggttttctctttacatttt |
199 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32407780 |
tatagtttttcaaggattcctctacttctagtgatgtaactatcctccaaccgatttactcttcttactacatattttgtaggttttctctttacatttt |
32407681 |
T |
|
| Q |
200 |
caaaccatgtaagtctattttccactattttactttaggtgctaccataa--ctctaatattgtcatttcaaattatatctcatctaatctttgctacat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||| |
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| T |
32407680 |
caaaccatgtaagtctattttccactattttactttaggtgctaccataactctctaatattgtcatttcaaattatatctcatctagtc-ttactacat |
32407582 |
T |
|
| Q |
298 |
ccccaccagacatctaacacaacatcttcatctca |
332 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
32407581 |
ccccaccagacatctaacacaacatcttcatctca |
32407547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 186
Target Start/End: Complemental strand, 32400079 - 32399896
Alignment:
| Q |
2 |
aagttacaacaagaaggccaaactatgtcagaatgttc-tatcattaaccatatctcggtccagcttaataatttctatat-ttttatactagtttgtcg |
99 |
Q |
| |
|
|||||| ||||||||| ||||| ||||||| |||||| |||||||||||||| | | || ||||||||||||| | ||| |||| || ||||||||| |
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| T |
32400079 |
aagttaaaacaagaagaccaaagtatgtcacaatgtttgtatcattaaccatactttgatctagcttaataatttatgtatcttttctattagtttgtca |
32399980 |
T |
|
| Q |
100 |
tatagtttttcaaggattcctctacttctactgatgtaactatcctccatccaatttactcttcttactacatattttgtaggtttt |
186 |
Q |
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| T |
32399979 |
tatagttttttaaggattcc-ct--ttttagtgatgtaactatcattcatctaatttattctttttattatatattttgtaggtttt |
32399896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 28628053 - 28628160
Alignment:
| Q |
90 |
tagtttgtcgtatagtttttcaagga-ttcctctacttctactgatgtaactatcctccatccaatttactcttcttactacatattttgtaggttttct |
188 |
Q |
| |
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|||||| || ||||||||||| ||| ||||||||| ||| |||| | ||||||||||||| || |||||| ||||||||||| | | ||||||||| |
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| T |
28628053 |
tagtttctcttatagtttttctaggtcttcctctacctcttgtgatttgactatcctccatcggatctactctccttactacataatctacaggttttct |
28628152 |
T |
|
| Q |
189 |
ctttacat |
196 |
Q |
| |
|
|||||||| |
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|
| T |
28628153 |
ctttacat |
28628160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 29520810 - 29520730
Alignment:
| Q |
91 |
agtttgtcgtatagtttttcaaggattcctctacttctactgatgtaactatcctccatccaatttactcttcttactaca |
171 |
Q |
| |
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||||| || ||||||||||| ||| ||||||||| ||| |||| | ||||||||||||| || |||||| ||||||||| |
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| T |
29520810 |
agtttctcttatagtttttctaggcttcctctacctcttgtgatttgactatcctccatctgatctactctccttactaca |
29520730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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