View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4058_low_1 (Length: 575)

Name: NF4058_low_1
Description: NF4058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4058_low_1
NF4058_low_1
[»] chr7 (28 HSPs)
chr7 (23-571)||(8017036-8017584)
chr7 (20-571)||(8102661-8103212)
chr7 (18-571)||(39985638-39986191)
chr7 (333-555)||(8635982-8636204)
chr7 (323-471)||(10494097-10494245)
chr7 (272-471)||(17268185-17268384)
chr7 (359-508)||(8667752-8667901)
chr7 (359-486)||(8671338-8671465)
chr7 (18-150)||(7877777-7877909)
chr7 (103-210)||(8628609-8628716)
chr7 (359-471)||(13333179-13333291)
chr7 (65-225)||(29577641-29577801)
chr7 (182-225)||(3147420-3147463)
chr7 (333-407)||(7877520-7877594)
chr7 (52-210)||(8545659-8545817)
chr7 (314-508)||(8590926-8591120)
chr7 (263-399)||(6789749-6789885)
chr7 (103-163)||(8570388-8570448)
chr7 (272-508)||(8602220-8602456)
chr7 (323-471)||(17260538-17260686)
chr7 (101-163)||(8581775-8581837)
chr7 (425-522)||(6789911-6790008)
chr7 (65-210)||(8585690-8585835)
chr7 (333-486)||(8654757-8654910)
chr7 (323-407)||(3147569-3147653)
chr7 (44-156)||(8382914-8383026)
chr7 (65-117)||(8559372-8559424)
chr7 (359-407)||(8659696-8659744)
[»] chr4 (8 HSPs)
chr4 (50-564)||(54396447-54396961)
chr4 (18-555)||(23596224-23596761)
chr4 (18-435)||(23587492-23587909)
chr4 (322-411)||(35132744-35132833)
chr4 (65-161)||(35132487-35132583)
chr4 (359-508)||(9335577-9335726)
chr4 (143-224)||(30775369-30775450)
chr4 (263-387)||(30775489-30775613)
[»] chr2 (19 HSPs)
chr2 (18-571)||(17716316-17716863)
chr2 (44-569)||(17717579-17718101)
chr2 (18-138)||(17622001-17622121)
chr2 (18-138)||(17648097-17648217)
chr2 (44-138)||(17705794-17705888)
chr2 (44-571)||(17666312-17666833)
chr2 (260-407)||(16657304-16657451)
chr2 (50-137)||(17704112-17704199)
chr2 (371-571)||(17647658-17647858)
chr2 (323-402)||(12234986-12235065)
chr2 (473-571)||(17703672-17703770)
chr2 (65-161)||(7542265-7542361)
chr2 (335-459)||(12245141-12245265)
chr2 (333-459)||(7542533-7542659)
chr2 (324-400)||(17703843-17703919)
chr2 (65-224)||(16661962-16662121)
chr2 (479-526)||(17719774-17719821)
chr2 (51-161)||(12245439-12245549)
chr2 (359-400)||(17621745-17621786)
[»] chr6 (5 HSPs)
chr6 (260-480)||(11133228-11133448)
chr6 (261-516)||(11196958-11197213)
chr6 (261-516)||(11156505-11156760)
chr6 (261-516)||(11200123-11200382)
chr6 (391-516)||(11161514-11161639)
[»] chr1 (3 HSPs)
chr1 (18-210)||(34466777-34466969)
chr1 (333-407)||(4678345-4678419)
chr1 (18-117)||(15595026-15595125)
[»] chr3 (1 HSPs)
chr3 (207-268)||(28776805-28776866)
[»] chr8 (1 HSPs)
chr8 (65-162)||(12528543-12528640)
[»] chr5 (1 HSPs)
chr5 (207-268)||(19229769-19229830)


Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 23 - 571
Target Start/End: Complemental strand, 8017584 - 8017036
Alignment:
Q  23 ctcaatctcctaagggccctagggtttccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaaatctt 122  Q
    ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  8017584 ctcaacctcctaagtgctctagggtttccactaatatccttcttgttcttcctcttaaactcctgaacaaaatgattaaccattctgttgtcaaaatctt 8017485  T
Q  123 caccaccaagatgggtatcaccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaatcaaa 222  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  8017484 caccaccaagatgggtatcaccagcagtagccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtaccacctcccaagtcaaa 8017385  T
Q  223 gatcaacacgttcttctcaccaacacttgtcgcctttttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaa 322  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||||| |      
T  8017384 gatcaacacattcttctcgccaacacttgtagcctttttgtcaagtccgtacgcaatagctgcagctgttggctcgttgataattctcaaaacattgagt 8017285  T
Q  323 ccagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataag 422  Q
    || || || ||||| ||||| || || |||||||| || ||||| ||||||||||| || || |||||||| ||||||||||||||||||||||| ||||    
T  8017284 cctgcaatgacaccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttcacagttgaaccgaggtaag 8017185  T
Q  423 cttcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggctt 522  Q
    ||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8017184 cttcagcaatctcacgcatctttatgagtaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttgtagttaacaccaatcattggctt 8017085  T
Q  523 ttcaccaggaccagcaatgaccttaaaaggccatagcttcatctcactc 571  Q
    |||||||||||||||||| |||||||||||||| | |||||| ||||||    
T  8017084 ttcaccaggaccagcaataaccttaaaaggccacaacttcatgtcactc 8017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 571
Target Start/End: Original strand, 8102661 - 8103212
Alignment:
Q  20 gttctcaatctcctaagggccctagggtttccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaaat 119  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8102661 gttctcaatctcctaagtgccctagggtttccgctaatatccttcttgttcttcctcttaaactcttgaacaaaatgggtaaccattctgttatcaaaat 8102760  T
Q  120 cttcaccaccaagatgggtatcaccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaatc 219  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  8102761 cttcaccaccaagatgggtatcacctgcagtagccttaacttcaaatataccctcttcaatagtaagaagtgacacatcaaaagtaccaccacccaaatc 8102860  T
Q  220 aaagatcaacacgttcttctcaccaacacttgtcgcctttttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattc 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||     
T  8102861 aaagatcaacacgttcttctcaccaacacttgtcgcctttttgtcaagaccgtaggcaatagcagcagcagttggctcattaataattctcaaaacattt 8102960  T
Q  320 aaaccagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagat 419  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || || |||||||| |  ||   ||| ||||    
T  8102961 aaaccagcgataacaccagcatctttagttgcttgacgctgagaatcattgaagtaagcagggacagtgacgacggcattcttaatggtgacaccaagat 8103060  T
Q  420 aagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattgg 519  Q
    ||||||| |||||||| |||||||| || |  ||||| || || ||||||||||  |||||  | || ||||||||||| ||||||||||||||||||||    
T  8103061 aagcttcggcaatctcacgcatcttaatcaaaaccatggatgagatttcctcagacgcaaacagtttttcctcacccttgtagttaacaccaatcattgg 8103160  T
Q  520 cttttcaccaggaccagcaatgaccttaaaaggccatagcttcatctcactc 571  Q
    ||||||||||||||| ||||| |||||||||||||| | |||||| ||||||    
T  8103161 cttttcaccaggacccgcaataaccttaaaaggccacaacttcatgtcactc 8103212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 18 - 571
Target Start/End: Original strand, 39985638 - 39986191
Alignment:
Q  18 cagttctcaatctcctaagggccctagggtttccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaa 117  Q
    |||| ||||| |||||||| || || ||||| ||||| || |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||    
T  39985638 cagtcctcaacctcctaagagctctggggttgccactgatgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttgtcaaa 39985737  T
Q  118 atcttcaccaccaagatgggtatcaccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaa 217  Q
    ||| ||||| ||||||||||| || || || ||||| || || ||||| ||||||||||||||||| || | ||| ||||||||||| ||||| || |      
T  39985738 atcctcacctccaagatgggtgtctccggctgtggctttcacctcaaagataccctcttcaatagttagcaaagagacatcaaaagtaccaccaccaagg 39985837  T
Q  218 tcaaagatcaacacgttcttctcaccaacacttgtcgcctttttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacat 317  Q
    ||||||||||| || |||||||| |||||||| || || || ||||||||||| || ||||| ||||||||||| ||||| || ||||||| ||  ||||    
T  39985838 tcaaagatcaagacattcttctctccaacactggttgctttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacat 39985937  T
Q  318 tcaaaccagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgag 417  Q
    | | ||| || ||||| |||||||| || || |||||||| || || || || |||||||||||||||||||||||||||||||| |  |  ||||| ||    
T  39985938 taagaccggcaataactccagcatccttggtagcttgacgctgggagtcattaaagtaagcagggacagtaacaacagcattcttaatggcagaaccaag 39986037  T
Q  418 ataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcatt 517  Q
     || ||||| |||||||| |||||||| ||||||||||| || || || || || |||||||||| ||| || ||||| || |||||||||||||| | |    
T  39986038 gtacgcttcggcaatctcacgcatcttcattagcaccatggaagagatctcttcggcagcaaattccttatcttcacctttgtagttaacaccaataagt 39986137  T
Q  518 ggcttttcaccaggaccagcaatgaccttaaaaggccatagcttcatctcactc 571  Q
    ||||||||| | || |||| ||| | |||||||||||| | |||||| ||||||    
T  39986138 ggcttttcagctggcccagaaataatcttaaaaggccacaacttcatgtcactc 39986191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 333 - 555
Target Start/End: Complemental strand, 8636204 - 8635982
Alignment:
Q  333 caccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaat 432  Q
    ||||||||||||| || | || ||| |||||||| ||||| ||||| || |||||||  || |||||||| |||| |||  | ||||| || ||||||||    
T  8636204 caccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaatgactgcattcttgacagatgattccagatatgcctcagcaat 8636105  T
Q  433 ctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttcaccagga 532  Q
    ||||||||||||| | || ||||||||||| |||||||||| |  || |||||| |  |||||||| || || ||| ||||||| || || ||| || ||    
T  8636104 ctctcgcatctttgtcaggaccatagacgatatttcctcaggaaaaagttgcttttgttcacccttgtatttcacaacaatcatgggtttgtcatcacga 8636005  T
Q  533 ccagcaatgaccttaaaaggcca 555  Q
    |||||||| |||||||| |||||    
T  8636004 ccagcaattaccttaaagggcca 8635982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 323 - 471
Target Start/End: Complemental strand, 10494245 - 10494097
Alignment:
Q  323 ccagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataag 422  Q
    ||||| ||| ||||||||||  |||| || |  ||||||||||||||||||||||| || |||||||||||||||||||| || | ||| || | ||| |    
T  10494245 ccagcaatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattcttgactggtgaccccaaatatg 10494146  T
Q  423 cttcagcaatctctcgcatctttattagcaccatagacgaaatttcctc 471  Q
    | || |||| ||||||||||||||| || |||||||| || ||||||||    
T  10494145 cctctgcaacctctcgcatctttataaggaccatagatgatatttcctc 10494097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 272 - 471
Target Start/End: Original strand, 17268185 - 17268384
Alignment:
Q  272 tatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgttgagaatcgttga 371  Q
    ||||||||||| ||||||||||| || || || |   |||| ||||| |  ||||| || |||||||||||| | || ||||  || |||||||||||||    
T  17268185 tatgcaatagctgcagcagttggttcattgattaccttcaatacattaaggccagcaatgacaccagcatctatggtggcttttcgctgagaatcgttga 17268284  T
Q  372 agtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctc 471  Q
    ||||||| ||||||||||  ||||||||| | || | |||  | |||||  | ||||||||||| ||||||||| | || ||||||||||||||||||||    
T  17268285 agtaagccgggacagtaatgacagcattcataaccgatgattctagatattcctcagcaatctcccgcatctttgtgagtaccatagacgaaatttcctc 17268384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 359 - 508
Target Start/End: Original strand, 8667752 - 8667901
Alignment:
Q  359 tgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatag 458  Q
    |||||||| ||||||||||| || ||||||||||| |||||||| || |  || || ||||| || || |||| ||||||||||||| | ||||||||||    
T  8667752 tgagaatcattgaagtaagctggcacagtaacaacggcattcttgaccggcgaccccagatatgcctccgcaacctctcgcatctttgtaagcaccatag 8667851  T
Q  459 acgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaaca 508  Q
    | || ||||||||||||  ||| ||||| || | |||||| || ||||||    
T  8667852 aagatatttcctcagcacaaaagtgcttctcttgacccttgtacttaaca 8667901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 359 - 486
Target Start/End: Complemental strand, 8671465 - 8671338
Alignment:
Q  359 tgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatag 458  Q
    |||||||| ||||||||||| || || |||||||| |||||||| || | |||  | ||||| || || |||| ||||||||||||| | ||||||||||    
T  8671465 tgagaatcattgaagtaagctggcacggtaacaacggcattcttgaccggtgactccagatatgcctccgcaacctctcgcatctttgtaagcaccatag 8671366  T
Q  459 acgaaatttcctcagcagcaaattgctt 486  Q
    | || ||||||||||||  |||||||||    
T  8671365 aagatatttcctcagcacaaaattgctt 8671338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 7877909 - 7877777
Alignment:
Q  18 cagttctcaatctcctaagggccctagggtttccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaa 117  Q
    |||||||||| |||||||||||||| |||||||||| ||| |||   || |||||||||||||||||    || |||||||| | |||||||||||||||    
T  7877909 cagttctcaacctcctaagggccctcgggtttccaccaatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaa 7877810  T
Q  118 atcttcaccaccaagatgggtatcaccagcagt 150  Q
     || || ||||| || || ||||| || |||||    
T  7877809 gtcctctccacctaggtgagtatctccggcagt 7877777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 210
Target Start/End: Original strand, 8628609 - 8628716
Alignment:
Q  103 cattctgttatcaaaatcttcaccaccaagatgggtatcaccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaa 202  Q
    ||||||||||||||| || || |||||||| || ||||  ||||||||||| ||||||||||| | | |  ||| ||| || || |||||||||||||||    
T  8628609 cattctgttatcaaagtcctctccaccaaggtgagtatttccagcagtggctttaacttcaaagacatcacctttaattgtgaggagagacacatcaaaa 8628708  T
Q  203 gtcccacc 210  Q
    ||||||||    
T  8628709 gtcccacc 8628716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 471
Target Start/End: Complemental strand, 13333291 - 13333179
Alignment:
Q  359 tgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatag 458  Q
    |||||||| ||||||||||| || ||||||||||| |||||||| || | ||| || | ||| || || |||| ||||||||||||| | || |||||||    
T  13333291 tgagaatcattgaagtaagccggcacagtaacaacggcattcttgactggtgaccccatatatgcctctgcaacctctcgcatctttgtaaggaccatag 13333192  T
Q  459 acgaaatttcctc 471  Q
    | || ||||||||    
T  13333191 atgatatttcctc 13333179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 29577801 - 29577641
Alignment:
Q  65 ttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaaatcttcaccaccaagatgggtatcaccagcagtggccttaacttcaa 164  Q
    |||||||||||||| ||||| |  ||||| ||| | |||||| | ||||| || || || || || || || |||||||||||||||||||| |||||||    
T  29577801 ttgttcttcctcttcaactcattcacaaagtggctcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctttacttcaa 29577702  T
Q  165 aaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaatcaaagat 225  Q
    || || | || | ||  || ||||||||||||||||| || ||||| || | |||||||||    
T  29577701 aactatcatccttaagtgtgagaagagacacatcaaaggtgccaccaccaagatcaaagat 29577641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 3147420 - 3147463
Alignment:
Q  182 gtaagaagagacacatcaaaagtcccacctcccaaatcaaagat 225  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||    
T  3147420 gtaagaagagacacatcaaaagtcccaccacccaagtcaaagat 3147463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 407
Target Start/End: Complemental strand, 7877594 - 7877520
Alignment:
Q  333 caccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacag 407  Q
    ||||||||||||| || ||||  ||||||||||| ||||| ||||| || ||||||||||| |||||||| ||||    
T  7877594 caccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattcttgacag 7877520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 210
Target Start/End: Original strand, 8545659 - 8545817
Alignment:
Q  52 actaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaaatcttcaccaccaagatgggtatcaccagcagtg 151  Q
    |||||||||||  |||||||||||||| ||||| |  ||||| |  || ||||||||||||||||| |||||||| || || |  || || |||||||||    
T  8545659 actaatatcctcattgttcttcctcttgaactccttcacaaagtaattcaccattctgttatcaaagtcttcaccgcctaggtaagtgtctccagcagtg 8545758  T
Q  152 gccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacc 210  Q
    ||||| || ||||| |     | || ||| ||||||| ||||||||||||||| |||||    
T  8545759 gccttgacatcaaagaccttatttttaattgtaagaatagacacatcaaaagttccacc 8545817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 508
Target Start/End: Original strand, 8590926 - 8591120
Alignment:
Q  314 acattcaaaccagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaac 413  Q
    |||||||| ||||| || |||||||||||||| || ||||  |  |||||||| || || ||||| || ||||||||||| |||||||| |||| |||      
T  8590926 acattcaagccagcaatgacaccagcatctttggtagctttcctctgagaatcattaaaataagctggcacagtaacaactgcattcttgacaggtgact 8591025  T
Q  414 cgagataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaaca 508  Q
    | | | |   |||||||||||||||||||||| | || ||||| || || |||||||| |||  ||   |||| ||||||||||| || ||||||    
T  8591026 ccaaaaacttttcagcaatctctcgcatctttgtgagaaccatggatgagatttcctccgcacaaagacgcttttcctcacccttgtacttaaca 8591120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 399
Target Start/End: Original strand, 6789749 - 6789885
Alignment:
Q  263 tcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgttgag 362  Q
    ||||| || ||||||| ||||||||| ||||| || || || ||||  | |||||| | |||||| ||  |||||||||||  ||| ||||  |||||||    
T  6789749 tcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatctaaagtggctttccgttgag 6789848  T
Q  363 aatcgttgaagtaagcagggacagtaacaacagcatt 399  Q
    |||| ||||| |||||||| ||||||| ||| |||||    
T  6789849 aatcattgaaataagcaggcacagtaataactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 8570388 - 8570448
Alignment:
Q  103 cattctgttatcaaaatcttcaccaccaagatgggtatcaccagcagtggccttaacttca 163  Q
    |||||||||||||||||||||||| || || || || || |||||||||||||| ||||||    
T  8570388 cattctgttatcaaaatcttcacctcccaggtgagtgtctccagcagtggccttgacttca 8570448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 508
Target Start/End: Original strand, 8602220 - 8602456
Alignment:
Q  272 tatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgttgagaatcgttga 371  Q
    ||||||| |||||| ||||||||||| || || || | ||  ||||| | |||||| ||  ||||||||||||| || ||||  || |||||||| || |    
T  8602220 tatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaa 8602319  T
Q  372 agtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctc 471  Q
    | ||||| || ||||||||||| |||||||| |||| |||  | ||| |    || ||||| || ||||||||| | || ||||| || || ||||||||    
T  8602320 aataagccggcacagtaacaactgcattcttgacaggtgactccagaaacttctctgcaatttcacgcatctttgtaaggaccattgatgagatttcctc 8602419  T
Q  472 agcagcaaattgcttgtcctcacccttatagttaaca 508  Q
    ||||   || ||||| ||| |||||||||| ||||||    
T  8602420 agcacagaagtgcttttccccacccttatacttaaca 8602456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 471
Target Start/End: Original strand, 17260538 - 17260686
Alignment:
Q  323 ccagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataag 422  Q
    ||||| ||||||||||||||| | || ||||  || |||||||| ||||| |||||||| ||||||| |||| ||||  | || | |||  | |||||      
T  17260538 ccagcaataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaataacaacattaataaccgatgattcaagatata 17260637  T
Q  423 cttcagcaatctctcgcatctttattagcaccatagacgaaatttcctc 471  Q
    | ||||||||||| |||||||| |  || ||||||||||| ||||||||    
T  17260638 cctcagcaatctcccgcatcttcacaagtaccatagacgagatttcctc 17260686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 8581775 - 8581837
Alignment:
Q  101 accattctgttatcaaaatcttcaccaccaagatgggtatcaccagcagtggccttaacttca 163  Q
    ||||||||||||||||||||||| || || || || || || |||||||||||||| ||||||    
T  8581775 accattctgttatcaaaatcttcccctcccaggtgagtgtctccagcagtggccttgacttca 8581837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 522
Target Start/End: Original strand, 6789911 - 6790008
Alignment:
Q  425 tcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggctt 522  Q
    ||||||||||| ||||||||  | || | ||||||||||| ||||||| ||   | |||||| |||||||||||||| | |||| ||||||| |||||    
T  6789911 tcagcaatctcccgcatcttggtgaggatcatagacgaaacttcctcaacacatagttgcttctcctcacccttatactcaacaacaatcatgggctt 6790008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 210
Target Start/End: Complemental strand, 8585835 - 8585690
Alignment:
Q  65 ttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaaatcttcaccaccaagatgggtatcaccagcagtggccttaacttcaa 164  Q
    |||||||| |||||||| || | |||||| | ||| | ||||||||||||||| ||  | || ||||| || ||||  ||||| || || ||||||||||    
T  8585835 ttgttctttctcttaaattcctcaacaaagtagttcaacattctgttatcaaagtcccctcccccaaggtgagtatttccagcggttgctttaacttcaa 8585736  T
Q  165 aaataccctcttcaatagtaagaagagacacatcaaaagtcccacc 210  Q
    | | | |  ||| ||| || || |||||||||||||||||||||||    
T  8585735 agacatcacctttaattgtgaggagagacacatcaaaagtcccacc 8585690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 486
Target Start/End: Original strand, 8654757 - 8654910
Alignment:
Q  333 caccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaat 432  Q
    ||||||||||| | |||||||  || ||||| || |||||||| || || |||||||||||  |||| || || | ||| || || || || || |||||    
T  8654757 caccagcatctatggttgcttttcgctgagagtcattgaagtatgccggcacagtaacaacgacatttttgacgggtgatccaaggtatgcctctgcaat 8654856  T
Q  433 ctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgctt 486  Q
    ||||||||||||| | || |||  ||| || ||||||||||||  |||||||||    
T  8654857 ctctcgcatctttgtaagaaccgcagatgatatttcctcagcacaaaattgctt 8654910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 407
Target Start/End: Original strand, 3147569 - 3147653
Alignment:
Q  323 ccagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacag 407  Q
    ||||| ||||||||||||||| | || ||||  || |||| ||| ||||| |||||||| || |||||||| |||||||| ||||    
T  3147569 ccagcaataacaccagcatctattgtcgctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattcttgacag 3147653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 8383026 - 8382914
Alignment:
Q  44 gggtttccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaaatcttcaccaccaagatgggtatcac 143  Q
    ||||| |||||||| ||||| || | ||||||||| ||||| | |||||| |  || || ||||||||||| || |||||||| || ||||| || || |    
T  8383026 gggttcccactaatgtccttattatgcttcctcttgaactcgtcaacaaagtacttcacgattctgttatctaagtcttcacctcctagatgagtgtctc 8382927  T
Q  144 cagcagtggcctt 156  Q
    | |||||||||||    
T  8382926 cggcagtggcctt 8382914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 8559372 - 8559424
Alignment:
Q  65 ttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaa 117  Q
    ||||||||||||| ||||||||  ||||| || || |||||||||||||||||    
T  8559372 ttgttcttcctctcaaactcttttacaaagtgtttcaccattctgttatcaaa 8559424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 8659696 - 8659744
Alignment:
Q  359 tgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacag 407  Q
    |||||||| ||||| || ||||| || ||||||||||||||||||||||    
T  8659696 tgagaatcattgaactatgcaggcactgtaacaacagcattcttcacag 8659744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 50 - 564
Target Start/End: Original strand, 54396447 - 54396961
Alignment:
Q  50 ccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaaatcttcaccaccaagatgggtatcaccagcag 149  Q
    ||||||||||||||||| || |||||| |||||||   ||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  54396447 ccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcag 54396546  T
Q  150 tggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaatcaaagatcaacacgttcttctcaccaacact 249  Q
    | || || ||||| || || || |||||||||||||||||||| ||||| ||||| ||||||||||| ||||| || | ||||||||  || ||    ||    
T  54396547 tagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttct 54396646  T
Q  250 tgtcgcctttttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagtt 349  Q
     |  || || || || | ||| || ||||| ||||||||||| ||||| |||||||| ||||| ||||||||||| |  ||| ||||||||||||| ||     
T  54396647 cgaagctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgta 54396746  T
Q  350 gcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttatta 449  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |    ||| ||| ||||||||||||  |||| |||||| || |    
T  54396747 gcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactggatgaccaagaaaagcttcagcaacttctctcatcttgatca 54396846  T
Q  450 gcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttcaccaggaccagcaatgaccttaaa 549  Q
     |||||| || ||||||||||| || ||||||| ||| || ||||| || || |||||| | ||||| || |||||| | ||||| | || ||| |||||    
T  54396847 acaccattgaagaaatttcctctgctgcaaatttcttctcttcacctttgtaattaacaacgatcataggtttttcagcgggacctggaacgactttaaa 54396946  T
Q  550 aggccatagcttcat 564  Q
     |||||||| |||||    
T  54396947 cggccatagtttcat 54396961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 555
Target Start/End: Complemental strand, 23596761 - 23596224
Alignment:
Q  18 cagttctcaatctcctaagggccctagggtttccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaa 117  Q
    |||||||||| || ||||| ||||| || |||||||||||||| ||||| ||||||||||| || ||||||||||||||||| ||||| |||||||||||    
T  23596761 cagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaa 23596662  T
Q  118 atcttcaccaccaagatgggtatcaccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaa 217  Q
    ||||||||| || | ||| ||||||||||| || || || || ||||| ||||| || |||||||||||||| || ||||||||||| ||||| || | |    
T  23596661 atcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttccaccaccaaga 23596562  T
Q  218 tcaaagatcaacacgttcttctcaccaacacttgtcgcctttttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacat 317  Q
    || || || |  |||||||||||||||  |||||| || || || |||||||| || |||||||| |||||||| |||||||||||||||||||  ||||    
T  23596561 tcgaaaataagaacgttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcggcagcagtgggctcgttaataattctcatcacat 23596462  T
Q  318 tcaaaccagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgag 417  Q
    | |  ||||  || ||||||||||| ||||| ||||||||||| |||||||||||||| ||||| || || ||||| |||||||| |  |||| ||| ||    
T  23596461 tgagtccagaaatgacaccagcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaag 23596362  T
Q  418 ataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcatt 517  Q
     ||||| || || |||||   |||||| || || ||||| || || || || ||||||| ||||||||| |||||  |||| ||||| ||  | ||||||    
T  23596361 gtaagcctctgcgatctccttcatcttcataagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagttcaccacgatcatt 23596262  T
Q  518 ggcttttcaccaggaccagcaatgaccttaaaaggcca 555  Q
    || || ||| |||| |||| ||||||||| || |||||    
T  23596261 ggtttgtcagcagggccaggaatgaccttgaacggcca 23596224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 23587909 - 23587492
Alignment:
Q  18 cagttctcaatctcctaagggccctagggtttccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaa 117  Q
    ||||||||||||| ||||| ||||| || |||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||||||||    
T  23587909 cagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaa 23587810  T
Q  118 atcttcaccaccaagatgggtatcaccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaa 217  Q
    ||||||||| || | ||| ||||||||||| || || || || ||||| ||||| || ||||||||||| || || ||||||||||| ||||| || | |    
T  23587809 atcttcacctcccaaatgtgtatcaccagctgtagctttgacctcaaagataccttcctcaatagtaagtagggaaacatcaaaagttccaccaccaaga 23587710  T
Q  218 tcaaagatcaacacgttcttctcaccaacacttgtcgcctttttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacat 317  Q
    || || || |  ||||||||||||||    ||||| || || || |||||||| || |||||||||||||| || || || |||||||||||||| ||||    
T  23587709 tcgaaaataagaacgttcttctcacccgtgcttgtagctttcttatcaagaccataagcaatagcagcagcggtaggttcattaataattctcaacacat 23587610  T
Q  318 tcaaaccagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgag 417  Q
    | |  ||||  || ||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| |  |||| ||| ||    
T  23587609 tgagtccagaaatgacaccggcatcttttgtagcttgacgttgtgaatcgttgaagtaagcaggcacagttacaacggcattcttaatcgttgtaccaag 23587510  T
Q  418 ataagcttcagcaatctc 435  Q
    |||||| || ||||||||    
T  23587509 ataagcctctgcaatctc 23587492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 411
Target Start/End: Original strand, 35132744 - 35132833
Alignment:
Q  322 accagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttga 411  Q
    |||||| ||| ||||||||||| |||| ||||  |||||||||||  | || |||||||| ||||||||||| |||||||| ||||||||    
T  35132744 accagcaatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattcttaacagttga 35132833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 35132487 - 35132583
Alignment:
Q  65 ttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaaatcttcaccaccaagatgggtatcaccagcagtggccttaactt 161  Q
    |||||||| ||||| |||||||| ||||| | ||| ||||||||||||||||| || || ||||| ||||| || |  || ||||||||||||||||    
T  35132487 ttgttctttctcttgaactcttgtacaaagtagttcaccattctgttatcaaagtcctctccaccgagatgagtgtttccggcagtggccttaactt 35132583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 508
Target Start/End: Complemental strand, 9335726 - 9335577
Alignment:
Q  359 tgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatag 458  Q
    |||||||| ||||||||||| || || |||||||| |||||||| || |  || || | ||| || || |||| ||||| ||||||| | |||| |||||    
T  9335726 tgagaatcattgaagtaagctggcacggtaacaacggcattcttgaccggcgaccccaaatatgcctccgcaacctctctcatctttgtaagcaacatag 9335627  T
Q  459 acgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaaca 508  Q
    | || ||||||||||||  ||| ||||| || | |||||| |||||||||    
T  9335626 aagatatttcctcagcacaaaagtgcttctcttgacccttgtagttaaca 9335577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 30775369 - 30775450
Alignment:
Q  143 ccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaatcaaaga 224  Q
    |||||||| || ||||||||||| | | | |||  ||| || |||||||||||||||||||||||||| || | ||||||||    
T  30775369 ccagcagttgctttaacttcaaacacatcatctctaatggtgagaagagacacatcaaaagtcccaccaccaagatcaaaga 30775450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 387
Target Start/End: Original strand, 30775489 - 30775613
Alignment:
Q  263 tcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgttgag 362  Q
    ||||| || ||||||||||| || ||||| ||||| ||||| ||||||| |||||| | |||||| ||  ||||||||||  |||| ||||  || || |    
T  30775489 tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtg 30775588  T
Q  363 aatcgttgaagtaagcagggacagt 387  Q
     ||| ||||| |||||||| |||||    
T  30775589 catcattgaaataagcaggcacagt 30775613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 571
Target Start/End: Complemental strand, 17716863 - 17716316
Alignment:
Q  18 cagttctcaatctcctaagggccctagggtttccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaa 117  Q
    |||| ||||| ||| |||| || || ||||| |||||||| |||||||||||||| ||||| |||||| ||||||| ||||| ||||||||||||| |||    
T  17716863 cagtcctcaacctcataagagctcttgggttgccactaatgtccttcttgttctttctcttgaactctcgaacaaagtggttcaccattctgttattaaa 17716764  T
Q  118 atcttcaccaccaagatgggtatcaccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaa 217  Q
    ||| ||||| ||||||||||  || || || || || ||||| | |||  ||| |||||||||||| || | ||| ||||||||||| ||||| || |      
T  17716763 atcctcacctccaagatgggcgtctccggctgtagctttaacctgaaagttacactcttcaatagttagcaaagagacatcaaaagtaccaccaccaagg 17716664  T
Q  218 tcaaagatcaacacgttcttctcaccaacacttgtcgcctttttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacat 317  Q
    ||||||||||| || |||||||| ||||| || ||||      |||||| ||| || ||||| || |||||||| ||||| |||||||||||||  | ||    
T  17716663 tcaaagatcaagacattcttctctccaacgctggtcg------tgtcaaaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaat 17716570  T
Q  318 tcaaaccagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgag 417  Q
    | | |||||| ||| |||||||||  ||||| ||||| |  ||||||   || ||||||||||||||||||||||| |||||||| |  |  || || ||    
T  17716569 taagaccagcaatagcaccagcatgcttagtagcttgtctctgagaaaaattaaagtaagcagggacagtaacaacggcattcttaatggcagagccaag 17716470  T
Q  418 ataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcatt 517  Q
     || || ||||||| ||| ||||||||  | || ||||| || || || || || || |||||||||||  | | |||  | ||||||||||||||||||    
T  17716469 gtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgcggcaaattgcttaactttaccactgtagttaacaccaatcatt 17716370  T
Q  518 ggcttttcaccaggaccagcaatgaccttaaaaggccatagcttcatctcactc 571  Q
    ||||||||| | || |||| ||| | |||||||||||| | |||||| ||||||    
T  17716369 ggcttttcatccgggccagaaattatcttaaaaggccacaacttcatatcactc 17716316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 44 - 569
Target Start/End: Complemental strand, 17718101 - 17717579
Alignment:
Q  44 gggtttccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaaatcttcaccaccaagatgggtatcac 143  Q
    ||||| |||||||| |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||| |||||| ||||| ||||||||||  || |    
T  17718101 gggttgccactaatgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttattaaaatcctcacctccaagatgggcgtctc 17718002  T
Q  144 cagcagtggccttaacttcaaaaataccctcttcaatagta---agaagagacacatcaaaagtcccacctcccaaatcaaagatcaacacgttcttctc 240  Q
    | || || || ||||| | |||  ||| |||||||||||||   || | ||| ||||||||||| ||||| || |  ||||||||||| || ||||||||    
T  17718001 cggctgtagctttaacctgaaagttacactcttcaatagtagttagcaaagagacatcaaaagtaccaccaccaaggtcaaagatcaagacattcttctc 17717902  T
Q  241 accaacacttgtcgcctttttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagca 340  Q
     ||||| || ||||      |||||| ||| || ||||| || |||||||| ||||| |  ||||||  ||  ||||| | |||||| | || | | |||    
T  17717901 tccaacgctggtcg------tgtcaaaaccataagcaatggctgcagcagtgggctcatcgataatttccatgacattaagaccagcaaaaagagcggca 17717808  T
Q  341 tctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgca 440  Q
    || |||||  ||||    |||||||| || ||||||||||||||||||||||| |||||| | |  || ||||| |  || || || |||||||| ||||    
T  17717807 tccttagtaacttgtatctgagaatcattaaagtaagcagggacagtaacaacggcattcctaatggtagaaccaaagtaggcctctgcaatctcacgca 17717708  T
Q  441 tctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttcaccaggaccagcaat 540  Q
    ||||    || ||||| || || || || || |||||||||||||| || ||||| || ||||| |||||||||||||||||||||||  | |||| |||    
T  17717707 tcttccagagtaccatggaagagatctcttctgcagcaaattgcttatcttcaccattgtagtttacaccaatcattggcttttcacccaggccagaaat 17717608  T
Q  541 gaccttaaaaggccatagcttcatctcac 569  Q
     | |||||||||||| | |||||| ||||    
T  17717607 tatcttaaaaggccacaacttcatatcac 17717579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 17622121 - 17622001
Alignment:
Q  18 cagttctcaatctcctaagggccctagggtttccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaa 117  Q
    |||| ||||| ||| |||| || || ||||| ||||| || |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||| |||    
T  17622121 cagtcctcaacctcataagagctcttgggttgccactgatgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttattaaa 17622022  T
Q  118 atcttcaccaccaagatgggt 138  Q
    ||| ||||| |||||||||||    
T  17622021 atcctcacctccaagatgggt 17622001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 17648217 - 17648097
Alignment:
Q  18 cagttctcaatctcctaagggccctagggtttccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaa 117  Q
    |||| ||||| ||| |||| || || ||||| |||||||| |||||||||||||| ||||| ||| |||||||||| || || ||||||||||||| |||    
T  17648217 cagtcctcaacctcataagagctcttgggttgccactaatgtccttcttgttctttctcttgaacacttgaacaaagtgattcaccattctgttattaaa 17648118  T
Q  118 atcttcaccaccaagatgggt 138  Q
    ||| ||||| |||||||||||    
T  17648117 atcctcacctccaagatgggt 17648097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 44 - 138
Target Start/End: Complemental strand, 17705888 - 17705794
Alignment:
Q  44 gggtttccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaaatcttcaccaccaagatgggt 138  Q
    ||||| |||||||| |||||||| ||||| ||||| ||||||| |||||| ||||| ||||||||||||| |||||| ||||| |||||||||||    
T  17705888 gggttgccactaatgtccttcttcttctttctcttgaactcttaaacaaagtggttcaccattctgttattaaaatcctcacctccaagatgggt 17705794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 44 - 571
Target Start/End: Complemental strand, 17666833 - 17666312
Alignment:
Q  44 gggtttccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaaatcttcaccaccaagatgggtatcac 143  Q
    ||||| ||||| || ||||| |||||||| || || |||||||||||||| || || ||||||||||||| |||||| ||||| ||||||||||  || |    
T  17666833 gggttgccactgatgtccttgttgttctttcttttgaactcttgaacaaagtgattcaccattctgttattaaaatcctcacctccaagatgggggtctc 17666734  T
Q  144 cagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaatcaaagatcaacacgttcttctcacc 243  Q
    | |  || || |||||  |||  ||||||||||||||||| || | | | ||||||||||| ||||| |  |  ||||||||||| || |||||||| ||    
T  17666733 cggttgtagctttaaccccaatgataccctcttcaatagttagcaaacagacatcaaaagtaccaccgcaaaggtcaaagatcaagacattcttctctcc 17666634  T
Q  244 aacacttgtcgcctttttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatct 343  Q
    ||  || ||||      |||||| ||| || ||||| || |||| ||| ||||| || ||||||| ||  ||||| | |||||  |||| ||| |||||     
T  17666633 aaagctggtcg------tgtcaaaaccataagcaatggctgcaggagtgggctcattgataattcccaggacattaagaccagaaataagaccggcatcc 17666540  T
Q  344 ttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatct 443  Q
    ||||| ||||| |  |||  |   || || |||||||||| | ||||||| |||||||| |  |  || || || || || ||||||| ||| |||||||    
T  17666539 ttagtagcttgtctgtgattaaaattaaaataagcagggatactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatct 17666440  T
Q  444 ttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttcaccaggaccagcaatgac 543  Q
    |  | || ||||| || || || || || || | ||||||||| || |||||||| ||||||||||||||||| |||||||||   || |||| ||| |     
T  17666439 tcgtgagtaccatggaagagatctcttctgcggaaaattgcttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataat 17666340  T
Q  544 cttaaaaggccatagcttcatctcactc 571  Q
    |||||| ||||| | |||||| ||||||    
T  17666339 cttaaatggccacaacttcatatcactc 17666312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 260 - 407
Target Start/End: Complemental strand, 16657451 - 16657304
Alignment:
Q  260 ttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgtt 359  Q
    ||||||||||| ||||||||||| |||||||| || || || |||||||  |  ||||| |  ||||||||  ||||||||||| | || ||||  || |    
T  16657451 ttgtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatctatggtggcttttcgct 16657352  T
Q  360 gagaatcgttgaagtaagcagggacagtaacaacagcattcttcacag 407  Q
    | ||||| ||||||||||| || |||||||||||||||||||| ||||    
T  16657351 gcgaatcattgaagtaagctggcacagtaacaacagcattcttgacag 16657304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 17704199 - 17704112
Alignment:
Q  50 ccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaaatcttcaccaccaagatggg 137  Q
    ||||| || |||||| ||||||| ||||| |||||||||||||| | ||| ||||||||||||| |||||| ||||| ||||||||||    
T  17704199 ccactgatgtccttcctgttctttctcttgaactcttgaacaaagtagttcaccattctgttattaaaatcctcacctccaagatggg 17704112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 571
Target Start/End: Complemental strand, 17647858 - 17647658
Alignment:
Q  371 aagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcct 470  Q
    ||||||||||||| |||||||||||||| ||| |  |  || || || || || ||||||| |||||| ||||| || || ||||| |  || || || |    
T  17647858 aagtaagcagggaaagtaacaacagcatccttaatggcagagccaaggtaggcctcagcaacctctcgaatcttcatgagtaccatggcagagatctctt 17647759  T
Q  471 cagcagcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttca-ccaggaccagcaatgaccttaaaaggccatagcttcatctcac 569  Q
    | || ||||||||||| || ||||| || ||||||||| ||||||||||||||||| ||||| |||| ||| | |||||||||||| | |||||| ||||    
T  17647758 ctgcggcaaattgcttatcttcaccattgtagttaacaacaatcattggcttttcatccagg-ccagaaattatcttaaaaggccacaacttcatatcac 17647660  T
Q  570 tc 571  Q
    ||    
T  17647659 tc 17647658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 402
Target Start/End: Original strand, 12234986 - 12235065
Alignment:
Q  323 ccagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattctt 402  Q
    ||||| || |||||||||||| |||||||||  ||||||||||| ||||| |||||||| || |||||||| ||||||||    
T  12234986 ccagcaatgacaccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattctt 12235065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 473 - 571
Target Start/End: Complemental strand, 17703770 - 17703672
Alignment:
Q  473 gcagcaaattgcttgtcctcacccttatagttaacaccaatcattggcttttcaccaggaccagcaatgaccttaaaaggccatagcttcatctcactc 571  Q
    |||| ||||||||| || ||||| || ||||||||||||||||||||||| ||| | || |||| ||| | |||||||||||| | |||||| ||||||    
T  17703770 gcagtaaattgcttatcttcaccattgtagttaacaccaatcattggcttatcatccgggccagaaataatcttaaaaggccacaacttcatatcactc 17703672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 7542265 - 7542361
Alignment:
Q  65 ttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaaatcttcaccaccaagatgggtatcaccagcagtggccttaactt 161  Q
    |||||||| ||||| |||||||| ||||| | |||  ||||||| |||||||| ||||| |||||||| || || |  |||||||||||||||||||    
T  7542265 ttgttctttctcttgaactcttgtacaaagtagttcgccattctattatcaaagtcttctccaccaaggtgagtgttgccagcagtggccttaactt 7542361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 459
Target Start/End: Complemental strand, 12245265 - 12245141
Alignment:
Q  335 ccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatct 434  Q
    ||||||||| | |||||||  || ||||||||  | || |||||||| |||||||||||||||||||| || | |||  | | ||| || |||||||| |    
T  12245265 ccagcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattctttaccggtgattctaaatatgcctcagcaattt 12245166  T
Q  435 ctcgcatctttattagcaccataga 459  Q
    ||||||||||| |||| ||||||||    
T  12245165 ctcgcatctttgttagtaccataga 12245141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 459
Target Start/End: Original strand, 7542533 - 7542659
Alignment:
Q  333 caccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaat 432  Q
    |||| |||||| |||| ||||  ||||||||||| || || |||||||| ||||||||||| |||||| |||||||||   | | ||| |  ||||||||    
T  7542533 cacccgcatctatagtggcttttcgttgagaatcattaaaataagcaggtacagtaacaactgcattcgtcacagttgtttctaaatacgactcagcaat 7542632  T
Q  433 ctctcgcatctttattagcaccataga 459  Q
     |||||||||||| | || ||||||||    
T  7542633 ttctcgcatctttgtgagtaccataga 7542659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 400
Target Start/End: Complemental strand, 17703919 - 17703843
Alignment:
Q  324 cagcgataacaccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattc 400  Q
    |||| |||||| ||||||| ||||| ||||| |  |||||||  || |||||| |||||||||||||||||||||||    
T  17703919 cagcaataacagcagcatccttagtagcttgtctctgagaattattaaagtaaacagggacagtaacaacagcattc 17703843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 224
Target Start/End: Complemental strand, 16662121 - 16661962
Alignment:
Q  65 ttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaaatcttcaccaccaagatgggtatcaccagcagtggccttaacttcaa 164  Q
    ||||||||||| ||||| ||||  ||||| | ||| | ||||||||||||||| || || || || || || || |  |||| |||||| ||||||||||    
T  16662121 ttgttcttcctattaaattctttcacaaagtagttcaacattctgttatcaaagtcctctcccccgaggtgagtgtttccagaagtggctttaacttcaa 16662022  T
Q  165 aaataccctcttcaatagtaagaagagacacatcaaaagtcccacctcccaaatcaaaga 224  Q
    | | | |  ||| ||| || || ||||||||||||||||||||||| || | ||||||||    
T  16662021 agacatcacctttaattgtgaggagagacacatcaaaagtcccaccaccaagatcaaaga 16661962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 526
Target Start/End: Complemental strand, 17719821 - 17719774
Alignment:
Q  479 aattgcttgtcctcacccttatagttaacaccaatcattggcttttca 526  Q
    |||||||| || | |||||| |||||||||||||||||||||||||||    
T  17719821 aattgcttatcattacccttgtagttaacaccaatcattggcttttca 17719774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 12245549 - 12245439
Alignment:
Q  51 cactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaaatcttcaccaccaagatgggtatcaccagcagt 150  Q
    |||||||||||   |||||||| ||||| ||||| ||  |||| | ||| |||||||| ||||||||||| || || ||||| || || |  ||||||||    
T  12245549 cactaatatccaatttgttctttctcttgaactcctgtgcaaagtagtttaccattctattatcaaaatcctctcctccaaggtgagtgtttccagcagt 12245450  T
Q  151 ggccttaactt 161  Q
    |||||||||||    
T  12245449 ggccttaactt 12245439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 400
Target Start/End: Complemental strand, 17621786 - 17621745
Alignment:
Q  359 tgagaatcgttgaagtaagcagggacagtaacaacagcattc 400  Q
    |||||||| || |||||| |||||||||||||||||||||||    
T  17621786 tgagaatcattaaagtaaacagggacagtaacaacagcattc 17621745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 480
Target Start/End: Original strand, 11133228 - 11133448
Alignment:
Q  260 ttgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgtt 359  Q
    ||||||||||| |||||||| ||||| || || |||||||| || |||| || ||| || | ||| || |||||||| |||||| |||| ||||| ||||    
T  11133228 ttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacctgcaataacacctgcatctctagtagcttggcgtt 11133327  T
Q  360 gagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccataga 459  Q
    | || || || ||||||||||| ||||| | |||  ||| |||||| ||||| || || ||| |||| |||||||| || || ||| | |  ||||| ||    
T  11133328 gcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatctcacgaatttttgtcaataccattga 11133427  T
Q  460 cgaaatttcctcagcagcaaa 480  Q
     || |||||||||||||||||    
T  11133428 tgatatttcctcagcagcaaa 11133448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 516
Target Start/End: Original strand, 11196958 - 11197213
Alignment:
Q  261 tgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgttg 360  Q
    |||||||||| |||||||| ||||| ||||  ||||| || || |||| || |||||| |  ||||| |||||||| ||||||  ||| |  || |||||    
T  11196958 tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttg 11197057  T
Q  361 agaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagac 460  Q
     || || || ||||||||||| ||||| | |||| ||| |||||| ||||| || || ||||||||||| |||||   ||| |||   |  ||||| ||     
T  11197058 tgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgat 11197157  T
Q  461 gaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcat 516  Q
    || ||||| ||||||||||| ||||| |||||  | |||||||||||| |||||||    
T  11197158 gagatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcat 11197213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 516
Target Start/End: Original strand, 11156505 - 11156760
Alignment:
Q  261 tgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttgacgttg 360  Q
    |||||||||| |||||||| ||||| ||||  ||||| || || |||| || |||||| |  ||||| |||||||| |||||||  || |  || |||||    
T  11156505 tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatcttgggtggactggcgttg 11156604  T
Q  361 agaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagac 460  Q
     || || || ||||||||||| ||||| | |||| ||| |||||| ||||| || || ||| ||||||| |||||   ||| |||   |  ||||| ||     
T  11156605 tgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaaacttcagctatctcggccatttttgccaataccatcgat 11156704  T
Q  461 gaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcat 516  Q
    || ||||| ||||||||||| ||||| |||||  | |||||||||||| |||||||    
T  11156705 gagatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatcat 11156760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 516
Target Start/End: Original strand, 11200123 - 11200382
Alignment:
Q  261 tgtcaagaccgtatgcaatagcagcagcagttggctcgttaataattctcaaaacattcaaaccagcgataacaccagcatctttagttgcttg----ac 356  Q
    |||||||||| |||||||| ||||| ||||  ||||| || || |||| ||||||||| |  ||||| ||| |||| ||||||  ||| |  ||    ||    
T  11200123 tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcaaaacattgaggccagcaatagcacccgcatctcaagtagactggcgtac 11200222  T
Q  357 gttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccat 456  Q
    |||| ||||| || ||||| | ||| ||| | | |||| ||| |||||| ||||| || || ||||||||||||||||| | ||| ||| | |  |||||    
T  11200223 gttgtgaatcattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccat 11200322  T
Q  457 agacgaaatttcctcagcagcaaattgcttgtcctcacccttatagttaacaccaatcat 516  Q
     || || ||||| || |||||||| ||||| |||||  | |||||||||||| |||||||    
T  11200323 ggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcat 11200382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 516
Target Start/End: Original strand, 11161514 - 11161639
Alignment:
Q  391 aacagcattcttcacagttgaaccgagataagcttcagcaatctctcgcatctttattagcaccatagacgaaatttcctcagcagcaaattgcttgtcc 490  Q
    |||| ||| |||||| ||||| || || ||||||||||||||||| | ||| ||| | |  ||||| || || ||||| || |||||||| ||||| |||    
T  11161514 aacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcc 11161613  T
Q  491 tcacccttatagttaacaccaatcat 516  Q
    ||  | |||||||||||| |||||||    
T  11161614 tcgtcattatagttaacaacaatcat 11161639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 34466969 - 34466777
Alignment:
Q  18 cagttctcaatctcctaagggccctagggtttccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaa 117  Q
    |||||||||| ||||| |  || ||||||||||||||||||||||| || | ||||||||| ||||| |   |||| |||||  ||||||| ||||||||    
T  34466969 cagttctcaacctcctcaaagctctagggtttccactaatatccttattatgcttcctcttgaactcctttgcaaagtggttcgccattctattatcaaa 34466870  T
Q  118 atcttcaccaccaagatgggtatcaccagcagtggccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtcccacc 210  Q
     || || |  || || || || | ||||| |||||||||||||||||| | |   || | ||| ||||| |||||||||||||||||||||||    
T  34466869 gtcctctcgtccgaggtgagtgttaccagaagtggccttaacttcaaagacattatccttaattgtaaggagagacacatcaaaagtcccacc 34466777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 407
Target Start/End: Complemental strand, 4678419 - 4678345
Alignment:
Q  333 caccagcatctttagttgcttgacgttgagaatcgttgaagtaagcagggacagtaacaacagcattcttcacag 407  Q
    ||||||||||| | || ||||  ||||||||||| |||||||| ||||| |||||||||||  ||||||||||||    
T  4678419 caccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattcttcacag 4678345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 15595026 - 15595125
Alignment:
Q  18 cagttctcaatctcctaagggccctagggtttccactaatatccttcttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaa 117  Q
    |||||||||||||||| | |||||| ||||| ||| ||||||||   ||||||||| |||| || || ||  |||| | ||| |||||||||||||||||    
T  15595026 cagttctcaatctcctcaaggcccttgggttcccagtaatatccactttgttcttcgtcttgaattcctgcgcaaagtagttgaccattctgttatcaaa 15595125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 28776805 - 28776866
Alignment:
Q  207 cacctcccaaatcaaagatcaacacgttcttctcaccaacacttgtcgcctttttgtcaaga 268  Q
    ||||||||||||||||||||||||  ||||||||||||| ||| ||| | ||||||| ||||    
T  28776805 cacctcccaaatcaaagatcaacaaattcttctcaccaatactcgtcacttttttgtgaaga 28776866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 12528543 - 12528640
Alignment:
Q  65 ttgttcttcctcttaaactcttgaacaaaatggttaaccattctgttatcaaaatcttcaccaccaagatgggtatcaccagcagtggccttaacttc 162  Q
    ||||||||||||||||||||||  ||||| || || |||||||  |||||||| || || || ||||| || || || || ||||||||||| |||||    
T  12528543 ttgttcttcctcttaaactctttcacaaagtgattcaccattcgattatcaaagtcctctcctccaaggtgagtgtctccggcagtggccttgacttc 12528640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 19229830 - 19229769
Alignment:
Q  207 cacctcccaaatcaaagatcaacacgttcttctcaccaacacttgtcgcctttttgtcaaga 268  Q
    ||||||||| ||||||||||||||  ||||||||||||| ||| ||| | ||||||| ||||    
T  19229830 cacctcccatatcaaagatcaacaaattcttctcaccaatactcgtcacttttttgtgaaga 19229769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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