View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4058_low_11 (Length: 249)
Name: NF4058_low_11
Description: NF4058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4058_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4184371 - 4184141
Alignment:
| Q |
1 |
tacatcaatgtgggtttgcccac-tattcctcaaattaaggaaaaagttcacaaacaaaccaattagtactagaaacagaaagtggaaccaatttaacaa |
99 |
Q |
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| T |
4184371 |
tacatcaatgtgggtttgcccacctattcctcaaattaaggaaaaagttcacaaacaaaccaattagtactagaaacagaaagtggaaccaatttaacaa |
4184272 |
T |
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| Q |
100 |
aaaagctcagggtgacaattattagagaggggacatgatttctccttcatgattttgacgggttaattattggtctatcaacatgcttgtttgtgctgga |
199 |
Q |
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| T |
4184271 |
aaaagctcagggtgacaattattagagaggggacatgatttctccttcatgattttgacgggttaattattggtctatcaacatgcttgtttgtgctgga |
4184172 |
T |
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| Q |
200 |
gaacattttatgactctcaacatgcttgttt |
230 |
Q |
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| T |
4184171 |
aaacattttatgactatcaacatgcttgttt |
4184141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 4184158 - 4184119
Alignment:
| Q |
174 |
ctatcaacatgcttgtttgtgctggagaacattttatgac |
213 |
Q |
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| T |
4184158 |
ctatcaacatgcttgtttgtgctagagaacattttttgac |
4184119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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