View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4058_low_3 (Length: 499)
Name: NF4058_low_3
Description: NF4058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4058_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Original strand, 15379625 - 15380100
Alignment:
| Q |
19 |
gtaataggataaaatatgtatattgtttgaaaagcaaaattaannnnnnnnacattttataaaattataaatccaagggagtttctttgatctcatcgtc |
118 |
Q |
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| T |
15379625 |
gtaataggataaaaaatgtatattgtttgaaaagcaaaattaattttttttacattttataaaattataaatccaagggagtttctttgatctcatcgtc |
15379724 |
T |
|
| Q |
119 |
tgcaagagccttctcaatagtgacatttacaggtatatttccttgctcaaacattttttatttatttctggtcttatgttccaatgttagtagtagcttc |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15379725 |
tgcaagagccttctcagtagtgacatttacaggtatatttccttgctcaaacattttttatttatttctggtcttatgttccaatgttagtagtagcttc |
15379824 |
T |
|
| Q |
219 |
attgcatatgttccaatagcacccttctttttatgatccaagttgcatgacaaaagaccaccagctatgcttccaccagtagtggagcaactgatagctt |
318 |
Q |
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| T |
15379825 |
attgcatatgttccaatagcacccttctttttatgatccaagttgcatgacaaaagaccaccagctatgcttccaccagtagtggagcaactgatagctt |
15379924 |
T |
|
| Q |
319 |
taaatagagtaagatttctcattgaaaagaagattcagcgatggatggaatcgggatgatccatgggatatgctgaactattgccatttagtttaagttt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15379925 |
taaatagagtaagatttctcattgaaaagaagattcagcgatggatggaatcgggatgatccatgtgatatgctgaactattgccatttagtttaagttt |
15380024 |
T |
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| Q |
419 |
ttgatgaatgatcgtaagaataacctaatcttatttcttatcctttgctaatttcttagtctcagggtgatctgtg |
494 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15380025 |
ttgatgaatgatcgtaacaataacctaatcttatttcttatcctttgctattttcttagtctcagggtgatctgtg |
15380100 |
T |
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