View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4058_low_9 (Length: 286)
Name: NF4058_low_9
Description: NF4058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4058_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 32408216 - 32407944
Alignment:
| Q |
1 |
cctgtaatttcggatttcagttccatggattaacattaatccatggagtagcatgttaataataactactggatgaatcttgtttctgttgcttaactag |
100 |
Q |
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| T |
32408216 |
cctgtaatttcggatttcagttccatggattaacattaatccatggagtagcatgttaataataactactggatgcatcttgtttctgttgcttaactag |
32408117 |
T |
|
| Q |
101 |
taaagatgtattcatctttaacttctgctgtttgcagttggtctattttatgctgcaagttatacagtagtactagtaatcaataagtagttgaaaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32408116 |
taaagatgtattcatctttaacttctgctgtttgcagttggtctattttatgctgcaagttatacagtagtactagtaatcaataagtagttgaaaattt |
32408017 |
T |
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| Q |
201 |
agcttttaaaaaagttacaatattgttttgatttttgaagaaattttatgtattgggaaaaatgctgtaagaa |
273 |
Q |
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| T |
32408016 |
agcttttaaaaaagttgcaatattgttttgatttttgaagaaattttatgtattgggaaaaatgctgtaagaa |
32407944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 131 - 273
Target Start/End: Complemental strand, 32400284 - 32400143
Alignment:
| Q |
131 |
tttgcagttggtctattttatgctgcaagttatacagtagtactagtaatcaataagtagttgaaaatttagcttttaaaaaagttacaatattgttttg |
230 |
Q |
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|||||| | ||||||||||||||||||||||||| || |||||| ||||||| |||||||||||| || ||||||| || ||||| ||||||||||||| |
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| T |
32400284 |
tttgcaatgggtctattttatgctgcaagttatatagaagtactggtaatcatcaagtagttgaaa-ttcagctttttaacaagttgcaatattgttttg |
32400186 |
T |
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| Q |
231 |
atttttgaagaaattttatgtattgggaaaaatgctgtaagaa |
273 |
Q |
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| T |
32400185 |
atttttgaagaatttttatgtattgggaaaaatgctgtaagaa |
32400143 |
T |
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