View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4059_high_3 (Length: 264)
Name: NF4059_high_3
Description: NF4059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4059_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 42535422 - 42535182
Alignment:
| Q |
1 |
ttgaagatgaataacatgatgccagaagtgatgttgatccaatcaacattgctaaatgaaaacaagtatagaaaagtgtagtttttaagatcaaaaacct |
100 |
Q |
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| T |
42535422 |
ttgaagatgaataacatgatgccagaactgatgttgatccaatcaacattgctaaatgaaaacaagtatagaaaagtgtagtttttaagatcaaaaacct |
42535323 |
T |
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| Q |
101 |
tgaatatactatcttgcggagagtaggttaggaccttggcattaacatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaaaccggcatc |
200 |
Q |
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| T |
42535322 |
tgaatatactatcttgcgcagagtaggttaggaccttggcattaacatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaaaccggcatc |
42535223 |
T |
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| Q |
201 |
cggcttggccctccttatgtcttcaatgcgtgttgatctgt |
241 |
Q |
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| T |
42535222 |
cggcttggccctccttatgtcttcaatgcgtgttgatctgt |
42535182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 42529698 - 42529460
Alignment:
| Q |
3 |
gaagatgaataacatgatgccagaagtgatgttgatccaatcaacattgctaaatgaaaacaagtatagaaaagtgtagtttttaagatcaaaaaccttg |
102 |
Q |
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| T |
42529698 |
gaagatgaataacatgatgccagaactgatgttgatccgttgaacattgctaaatgaaaacgagtatagaaaagtgtagtttttaaggtcaaaaaccttg |
42529599 |
T |
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| Q |
103 |
aatatactatcttgcggagagtaggttaggaccttggcattaacatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaaaccggcatccg |
202 |
Q |
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| T |
42529598 |
aacatactatcttgcgcagagtaggttaagaccttgacattaacatcatcaaattttacaacaaaagaatctgactgaaaaagatcaaaaccggcatccg |
42529499 |
T |
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| Q |
203 |
gcttggccctccttatgtcttcaatgcgtgttgatctgt |
241 |
Q |
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| T |
42529498 |
gcttggccctccttgtgtattcaatacttgttgatctgt |
42529460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 27822207 - 27822153
Alignment:
| Q |
109 |
ctatcttgcggagagtaggttaggaccttggcattaacatcatcaaatttcacaa |
163 |
Q |
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| T |
27822207 |
ctatcctgcgcagagtatgttaggacctttgcattaacatcatcaaattccacaa |
27822153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 27822138 - 27822084
Alignment:
| Q |
166 |
aaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgt |
220 |
Q |
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| T |
27822138 |
aaagactcggactggaaaagaggaaaaccagcatccggcttggccctctttatgt |
27822084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 27822347 - 27822302
Alignment:
| Q |
65 |
agtatagaaaagtgtagtttttaagatcaaaaaccttgaatatact |
110 |
Q |
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| T |
27822347 |
agtatagcaaagtgtagtttttaagatcgaagaccttgtatatact |
27822302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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